Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G314200.1 | Wheat | nucleus | 95.65 | 93.62 |
| TraesCS1B01G326500.1 | Wheat | nucleus | 93.48 | 93.48 |
| HORVU1Hr1G067160.1 | Barley | nucleus | 85.87 | 82.29 |
| TraesCS3D01G321700.1 | Wheat | nucleus | 55.98 | 59.54 |
| Os05t0497200-01 | Rice | nucleus | 60.87 | 59.26 |
| Zm00001d038584_P001 | Maize | nucleus | 60.33 | 52.86 |
| KXG22269 | Sorghum | nucleus | 59.24 | 50.93 |
| Zm00001d010676_P001 | Maize | nucleus | 56.52 | 50.73 |
| GSMUA_Achr8P15820_001 | Banana | nucleus | 43.48 | 47.06 |
| PGSC0003DMT400076408 | Potato | nucleus | 32.61 | 39.22 |
| Solyc02g077840.1.1 | Tomato | nucleus | 32.61 | 38.96 |
| VIT_10s0003g00130.t01 | Wine grape | nucleus | 30.98 | 37.5 |
| KRH21385 | Soybean | nucleus | 32.07 | 36.2 |
| KRH10926 | Soybean | nucleus | 32.61 | 34.88 |
| CDY15674 | Canola | nucleus | 32.61 | 33.71 |
| Bra030094.1-P | Field mustard | nucleus | 32.61 | 33.71 |
| TraesCS2D01G543900.1 | Wheat | nucleus | 34.78 | 33.16 |
| CDY34107 | Canola | nucleus | 32.61 | 33.15 |
| Bra032898.1-P | Field mustard | nucleus | 32.61 | 33.15 |
| CDX94610 | Canola | nucleus | 29.89 | 33.13 |
| CDY35734 | Canola | nucleus | 32.61 | 32.43 |
| Bra010881.1-P | Field mustard | nucleus | 32.07 | 32.07 |
| CDX90145 | Canola | nucleus | 32.07 | 32.07 |
| TraesCS6D01G161300.1 | Wheat | nucleus | 35.87 | 31.88 |
| AT1G28360.1 | Thale cress | nucleus | 32.61 | 31.75 |
| CDY30806 | Canola | nucleus | 31.52 | 31.69 |
| TraesCS6D01G121100.1 | Wheat | nucleus | 33.7 | 30.39 |
| TraesCS1D01G314800.1 | Wheat | nucleus | 37.5 | 29.24 |
| TraesCS7D01G426700.1 | Wheat | nucleus | 31.52 | 29.15 |
| TraesCS2D01G425700.1 | Wheat | nucleus | 33.7 | 28.57 |
| TraesCS3D01G321500.1 | Wheat | nucleus | 36.41 | 27.24 |
| TraesCS2D01G286900.1 | Wheat | plastid | 28.8 | 20.23 |
| TraesCS6D01G192200.1 | Wheat | nucleus | 30.43 | 18.79 |
| TraesCS2D01G118200.1 | Wheat | nucleus, plastid | 29.35 | 18.31 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31677 | PANTHER:PTHR31677:SF41 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS1D01G314700 | EnsemblPlants:TraesCS1D01G314700.1 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr1D:-:409798746..409799300
Molecular Weight (calculated)
19758.4 Da
IEP (calculated)
10.488
GRAVY (calculated)
-0.512
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MQMLPETRGH RSSGVGGGGA GAGGRADAAA QGHYRGVRKR PWGRYAAEIR DPWKKTRVWL GTYDTAVDAA LAYDRAAVAL RGPKARTNFA GGHLAPHQQQ
101: QACLLAPRPP ARPFGGRLDV AHPSPWHFVY FPSRLQEFLA QPLPAGDARD AAPSPPSTVL ELRTGPSSCP QFDLNEPPSL MFGS
101: QACLLAPRPP ARPFGGRLDV AHPSPWHFVY FPSRLQEFLA QPLPAGDARD AAPSPPSTVL ELRTGPSSCP QFDLNEPPSL MFGS
001: MASTTCAREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG IKAKTNFPSP LSLDLNHLPS APSAATAAAN NQPHQHQQLW
101: FAAPPPVPPS SDHHHQHHRI FLRTGVLNDK TSDYSSTEAP LYFTSSPNTA TSSPGYQVVG FPMMNSSPSP VTVRRGLAID LNEPPPLWL
101: FAAPPPVPPS SDHHHQHHRI FLRTGVLNDK TSDYSSTEAP LYFTSSPNTA TSSPGYQVVG FPMMNSSPSP VTVRRGLAID LNEPPPLWL
Arabidopsis Description
ERF12Ethylene-responsive transcription factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q94ID6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.