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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX90145 Canola nucleus 96.76 97.28
CDY15674 Canola nucleus 77.3 80.34
CDY34107 Canola nucleus 78.38 80.11
CDY30806 Canola nucleus 78.92 79.78
AT1G28360.1 Thale cress nucleus 80.0 78.31
CDX94610 Canola nucleus 69.73 77.71
VIT_10s0003g00130.t01 Wine grape nucleus 49.19 59.87
KRH21385 Soybean nucleus 52.43 59.51
Solyc02g077840.1.1 Tomato nucleus 48.65 58.44
PGSC0003DMT400076408 Potato nucleus 48.11 58.17
KRH10926 Soybean nucleus 51.89 55.81
GSMUA_Achr8P15820_001 Banana nucleus 41.08 44.71
Zm00001d012584_P001 Maize nucleus 37.3 41.82
TraesCS3A01G328100.1 Wheat nucleus 37.3 39.88
TraesCS3D01G321700.1 Wheat nucleus 37.3 39.88
TraesCS3B01G357600.1 Wheat nucleus 37.3 39.66
CDY25733 Canola nucleus 29.19 39.13
EES01601 Sorghum nucleus 36.76 38.42
Zm00001d043204_P001 Maize nucleus 37.84 37.63
CDY70796 Canola nucleus 32.43 37.27
CDX90146 Canola nucleus 34.59 37.21
CDY69368 Canola nucleus 34.05 36.63
CDY02523 Canola nucleus 33.51 36.47
CDY34104 Canola nucleus 31.89 36.42
CDY70175 Canola nucleus 32.97 36.31
CDY15673 Canola nucleus 32.97 36.31
Os05t0497200-01 Rice nucleus 36.76 35.98
CDX97640 Canola nucleus 36.22 35.45
CDY34105 Canola nucleus 30.27 35.44
CDX98534 Canola nucleus 36.22 34.18
CDY24111 Canola nucleus 32.43 34.09
CDY45936 Canola nucleus 36.76 33.83
CDY61213 Canola nucleus 32.43 33.71
CDY22810 Canola nucleus 36.76 33.5
CDY25874 Canola nucleus 35.68 33.0
CDX82442 Canola nucleus 36.22 32.84
CDX75817 Canola nucleus 36.22 32.84
CDX89866 Canola nucleus 31.89 32.78
TraesCS1D01G314700.1 Wheat nucleus 32.43 32.61
TraesCS1B01G326500.1 Wheat nucleus 32.43 32.61
CDY20105 Canola nucleus 36.76 32.54
HORVU1Hr1G067160.1 Barley nucleus 33.51 32.29
CDY18185 Canola nucleus 31.35 32.22
CDY37113 Canola mitochondrion, nucleus 36.22 32.21
CDX96955 Canola nucleus 33.51 32.12
CDY14914 Canola nucleus 33.51 32.12
TraesCS1A01G314200.1 Wheat nucleus 32.43 31.91
CDX82253 Canola nucleus 36.76 31.63
CDY36045 Canola nucleus 36.76 31.34
CDY32314 Canola nucleus 36.22 30.73
Zm00001d010676_P001 Maize nucleus 33.51 30.24
Zm00001d038584_P001 Maize nucleus 33.51 29.52
KXG22269 Sorghum nucleus 32.43 28.04
CDY61906 Canola cytosol 20.0 27.41
CDX70526 Canola nucleus 24.86 21.7
CDX78545 Canola nucleus 24.86 21.7
CDY11748 Canola nucleus 26.49 21.21
CDX90126 Canola nucleus 26.49 20.94
CDX94591 Canola nucleus 27.03 20.75
CDY15690 Canola nucleus 26.49 20.5
CDY26605 Canola nucleus 27.57 17.35
CDY16048 Canola nucleus 27.03 17.12
CDY51586 Canola nucleus 26.49 16.61
CDY03876 Canola nucleus 26.49 16.39
CDY36131 Canola nucleus 26.49 16.39
CDY24422 Canola nucleus 26.49 16.39
CDY19407 Canola nucleus 27.57 16.14
CDY72607 Canola nucleus 25.95 14.86
CDY16037 Canola nucleus 15.68 14.65
CDX85621 Canola nucleus 27.03 14.62
CDX91091 Canola nucleus 26.49 14.41
CDY68296 Canola nucleus 24.86 14.24
CDX70826 Canola nucleus 25.41 14.2
CDY02618 Canola nucleus 25.41 14.16
CDY26598 Canola nucleus 15.14 14.14
CDY13901 Canola nucleus 25.41 13.99
CDX88931 Canola nucleus 24.86 13.98
CDY58106 Canola nucleus 24.86 13.86
CDY46294 Canola nucleus 3.78 4.86
CDX98022 Canola nucleus 3.78 3.54
Protein Annotations
MapMan:15.5.7.1Gene3D:3.30.730.10GO:A0A078HE69UniProt:A0A078HE69InterPro:AP2/ERF_domInterPro:AP2/ERF_dom_sf
EnsemblPlants:CDY35734ProteinID:CDY35734ProteinID:CDY35734.1InterPro:DNA-bd_dom_sfGO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00059163001InterPro:IPR001471InterPro:IPR036955PFAM:PF00847
PRINTS:PR00367PFscan:PS51032PANTHER:PTHR31677SMART:SM00380SUPFAM:SSF54171UniParc:UPI0004EDC47A
SEG:seg:::::
Description
BnaC03g58550DBnaC03g58550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HE69]
Coordinates
chrLK032359:+:135834..136391
Molecular Weight (calculated)
20494.2 Da
IEP (calculated)
10.101
GRAVY (calculated)
-0.439
Length
185 amino acids
Sequence
(BLAST)
001: MVSTTCAREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG IKAKTNFPPP LSLNLNHIPS APSATAAAAD NHHNQHHWFP
101: APPPPPLSIS DNHHHHHRIF LRTGVLSDKA SDFPTTAPLY FAASPDVATS ASRVFEFPIM SPSPSSATAR RGLAIDLNEP PPLWL
Best Arabidopsis Sequence Match ( AT1G28360.1 )
(BLAST)
001: MASTTCAREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG IKAKTNFPSP LSLDLNHLPS APSAATAAAN NQPHQHQQLW
101: FAAPPPVPPS SDHHHQHHRI FLRTGVLNDK TSDYSSTEAP LYFTSSPNTA TSSPGYQVVG FPMMNSSPSP VTVRRGLAID LNEPPPLWL
Arabidopsis Description
ERF12Ethylene-responsive transcription factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q94ID6]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.