Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX90145 | Canola | nucleus | 96.76 | 97.28 |
CDY15674 | Canola | nucleus | 77.3 | 80.34 |
CDY34107 | Canola | nucleus | 78.38 | 80.11 |
CDY30806 | Canola | nucleus | 78.92 | 79.78 |
AT1G28360.1 | Thale cress | nucleus | 80.0 | 78.31 |
CDX94610 | Canola | nucleus | 69.73 | 77.71 |
VIT_10s0003g00130.t01 | Wine grape | nucleus | 49.19 | 59.87 |
KRH21385 | Soybean | nucleus | 52.43 | 59.51 |
Solyc02g077840.1.1 | Tomato | nucleus | 48.65 | 58.44 |
PGSC0003DMT400076408 | Potato | nucleus | 48.11 | 58.17 |
KRH10926 | Soybean | nucleus | 51.89 | 55.81 |
GSMUA_Achr8P15820_001 | Banana | nucleus | 41.08 | 44.71 |
Zm00001d012584_P001 | Maize | nucleus | 37.3 | 41.82 |
TraesCS3A01G328100.1 | Wheat | nucleus | 37.3 | 39.88 |
TraesCS3D01G321700.1 | Wheat | nucleus | 37.3 | 39.88 |
TraesCS3B01G357600.1 | Wheat | nucleus | 37.3 | 39.66 |
CDY25733 | Canola | nucleus | 29.19 | 39.13 |
EES01601 | Sorghum | nucleus | 36.76 | 38.42 |
Zm00001d043204_P001 | Maize | nucleus | 37.84 | 37.63 |
CDY70796 | Canola | nucleus | 32.43 | 37.27 |
CDX90146 | Canola | nucleus | 34.59 | 37.21 |
CDY69368 | Canola | nucleus | 34.05 | 36.63 |
CDY02523 | Canola | nucleus | 33.51 | 36.47 |
CDY34104 | Canola | nucleus | 31.89 | 36.42 |
CDY70175 | Canola | nucleus | 32.97 | 36.31 |
CDY15673 | Canola | nucleus | 32.97 | 36.31 |
Os05t0497200-01 | Rice | nucleus | 36.76 | 35.98 |
CDX97640 | Canola | nucleus | 36.22 | 35.45 |
CDY34105 | Canola | nucleus | 30.27 | 35.44 |
CDX98534 | Canola | nucleus | 36.22 | 34.18 |
CDY24111 | Canola | nucleus | 32.43 | 34.09 |
CDY45936 | Canola | nucleus | 36.76 | 33.83 |
CDY61213 | Canola | nucleus | 32.43 | 33.71 |
CDY22810 | Canola | nucleus | 36.76 | 33.5 |
CDY25874 | Canola | nucleus | 35.68 | 33.0 |
CDX82442 | Canola | nucleus | 36.22 | 32.84 |
CDX75817 | Canola | nucleus | 36.22 | 32.84 |
CDX89866 | Canola | nucleus | 31.89 | 32.78 |
TraesCS1D01G314700.1 | Wheat | nucleus | 32.43 | 32.61 |
TraesCS1B01G326500.1 | Wheat | nucleus | 32.43 | 32.61 |
CDY20105 | Canola | nucleus | 36.76 | 32.54 |
HORVU1Hr1G067160.1 | Barley | nucleus | 33.51 | 32.29 |
CDY18185 | Canola | nucleus | 31.35 | 32.22 |
CDY37113 | Canola | mitochondrion, nucleus | 36.22 | 32.21 |
CDX96955 | Canola | nucleus | 33.51 | 32.12 |
CDY14914 | Canola | nucleus | 33.51 | 32.12 |
TraesCS1A01G314200.1 | Wheat | nucleus | 32.43 | 31.91 |
CDX82253 | Canola | nucleus | 36.76 | 31.63 |
CDY36045 | Canola | nucleus | 36.76 | 31.34 |
CDY32314 | Canola | nucleus | 36.22 | 30.73 |
Zm00001d010676_P001 | Maize | nucleus | 33.51 | 30.24 |
Zm00001d038584_P001 | Maize | nucleus | 33.51 | 29.52 |
KXG22269 | Sorghum | nucleus | 32.43 | 28.04 |
CDY61906 | Canola | cytosol | 20.0 | 27.41 |
CDX70526 | Canola | nucleus | 24.86 | 21.7 |
CDX78545 | Canola | nucleus | 24.86 | 21.7 |
CDY11748 | Canola | nucleus | 26.49 | 21.21 |
CDX90126 | Canola | nucleus | 26.49 | 20.94 |
CDX94591 | Canola | nucleus | 27.03 | 20.75 |
CDY15690 | Canola | nucleus | 26.49 | 20.5 |
CDY26605 | Canola | nucleus | 27.57 | 17.35 |
CDY16048 | Canola | nucleus | 27.03 | 17.12 |
CDY51586 | Canola | nucleus | 26.49 | 16.61 |
CDY03876 | Canola | nucleus | 26.49 | 16.39 |
CDY36131 | Canola | nucleus | 26.49 | 16.39 |
CDY24422 | Canola | nucleus | 26.49 | 16.39 |
CDY19407 | Canola | nucleus | 27.57 | 16.14 |
CDY72607 | Canola | nucleus | 25.95 | 14.86 |
CDY16037 | Canola | nucleus | 15.68 | 14.65 |
CDX85621 | Canola | nucleus | 27.03 | 14.62 |
CDX91091 | Canola | nucleus | 26.49 | 14.41 |
CDY68296 | Canola | nucleus | 24.86 | 14.24 |
CDX70826 | Canola | nucleus | 25.41 | 14.2 |
CDY02618 | Canola | nucleus | 25.41 | 14.16 |
CDY26598 | Canola | nucleus | 15.14 | 14.14 |
CDY13901 | Canola | nucleus | 25.41 | 13.99 |
CDX88931 | Canola | nucleus | 24.86 | 13.98 |
CDY58106 | Canola | nucleus | 24.86 | 13.86 |
CDY46294 | Canola | nucleus | 3.78 | 4.86 |
CDX98022 | Canola | nucleus | 3.78 | 3.54 |
Protein Annotations
MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078HE69 | UniProt:A0A078HE69 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
EnsemblPlants:CDY35734 | ProteinID:CDY35734 | ProteinID:CDY35734.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00059163001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31677 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0004EDC47A |
SEG:seg | : | : | : | : | : |
Description
BnaC03g58550DBnaC03g58550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HE69]
Coordinates
chrLK032359:+:135834..136391
Molecular Weight (calculated)
20494.2 Da
IEP (calculated)
10.101
GRAVY (calculated)
-0.439
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSTTCAREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG IKAKTNFPPP LSLNLNHIPS APSATAAAAD NHHNQHHWFP
101: APPPPPLSIS DNHHHHHRIF LRTGVLSDKA SDFPTTAPLY FAASPDVATS ASRVFEFPIM SPSPSSATAR RGLAIDLNEP PPLWL
101: APPPPPLSIS DNHHHHHRIF LRTGVLSDKA SDFPTTAPLY FAASPDVATS ASRVFEFPIM SPSPSSATAR RGLAIDLNEP PPLWL
001: MASTTCAREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG IKAKTNFPSP LSLDLNHLPS APSAATAAAN NQPHQHQQLW
101: FAAPPPVPPS SDHHHQHHRI FLRTGVLNDK TSDYSSTEAP LYFTSSPNTA TSSPGYQVVG FPMMNSSPSP VTVRRGLAID LNEPPPLWL
101: FAAPPPVPPS SDHHHQHHRI FLRTGVLNDK TSDYSSTEAP LYFTSSPNTA TSSPGYQVVG FPMMNSSPSP VTVRRGLAID LNEPPPLWL
Arabidopsis Description
ERF12Ethylene-responsive transcription factor 12 [Source:UniProtKB/Swiss-Prot;Acc:Q94ID6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.