Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018864.1-P | Field mustard | nucleus | 97.54 | 97.54 |
| CDY37113 | Canola | mitochondrion, nucleus | 93.6 | 91.35 |
| CDY36045 | Canola | nucleus | 76.35 | 71.43 |
| CDX82253 | Canola | nucleus | 74.88 | 70.7 |
| AT1G50640.1 | Thale cress | mitochondrion, nucleus | 76.85 | 69.33 |
| GSMUA_Achr3P13010_001 | Banana | nucleus | 47.78 | 63.4 |
| GSMUA_Achr4P04060_001 | Banana | mitochondrion | 46.31 | 59.49 |
| GSMUA_Achr4P06170_001 | Banana | nucleus | 51.23 | 56.22 |
| Solyc10g006130.1.1 | Tomato | mitochondrion, nucleus | 58.13 | 53.39 |
| GSMUA_Achr1P18230_001 | Banana | nucleus | 49.75 | 53.16 |
| KRH14810 | Soybean | nucleus | 54.19 | 52.13 |
| KRH73332 | Soybean | nucleus | 55.17 | 52.09 |
| VIT_12s0059g01460.t01 | Wine grape | nucleus | 52.22 | 51.96 |
| PGSC0003DMT400037359 | Potato | mitochondrion, nucleus | 56.65 | 51.57 |
| Solyc07g064890.1.1 | Tomato | nucleus | 60.59 | 51.25 |
| PGSC0003DMT400057443 | Potato | nucleus | 60.1 | 50.83 |
| GSMUA_Achr4P11430_001 | Banana | nucleus | 36.95 | 45.73 |
| CDY25733 | Canola | nucleus | 30.54 | 44.93 |
| CDY15673 | Canola | nucleus | 36.95 | 44.64 |
| CDY70796 | Canola | nucleus | 34.98 | 44.1 |
| CDY70175 | Canola | nucleus | 36.45 | 44.05 |
| CDY34105 | Canola | nucleus | 33.99 | 43.67 |
| CDX90146 | Canola | nucleus | 36.95 | 43.6 |
| CDY02523 | Canola | nucleus | 35.96 | 42.94 |
| CDY34104 | Canola | nucleus | 33.99 | 42.59 |
| CDY69368 | Canola | nucleus | 35.96 | 42.44 |
| CDX97640 | Canola | nucleus | 36.45 | 39.15 |
| CDY15674 | Canola | nucleus | 33.99 | 38.76 |
| CDY34107 | Canola | nucleus | 34.48 | 38.67 |
| CDY61906 | Canola | cytosol | 25.62 | 38.52 |
| CDX94610 | Canola | nucleus | 31.03 | 37.95 |
| CDY30806 | Canola | nucleus | 33.99 | 37.7 |
| CDY24111 | Canola | nucleus | 32.51 | 37.5 |
| CDY45936 | Canola | nucleus | 36.95 | 37.31 |
| CDX98534 | Canola | nucleus | 35.96 | 37.24 |
| CDY25874 | Canola | nucleus | 36.45 | 37.0 |
| CDX90145 | Canola | nucleus | 33.5 | 36.96 |
| CDX75817 | Canola | nucleus | 36.95 | 36.76 |
| CDX82442 | Canola | nucleus | 36.95 | 36.76 |
| CDY35734 | Canola | nucleus | 33.5 | 36.76 |
| CDX89866 | Canola | nucleus | 32.51 | 36.67 |
| CDY61213 | Canola | nucleus | 32.02 | 36.52 |
| CDY18185 | Canola | nucleus | 32.02 | 36.11 |
| CDY20105 | Canola | nucleus | 35.96 | 34.93 |
| CDY14914 | Canola | nucleus | 32.02 | 33.68 |
| CDX96955 | Canola | nucleus | 31.53 | 33.16 |
| CDY32314 | Canola | nucleus | 35.47 | 33.03 |
| CDX70526 | Canola | nucleus | 24.14 | 23.11 |
| CDX78545 | Canola | nucleus | 23.65 | 22.64 |
| CDY11748 | Canola | nucleus | 23.15 | 20.35 |
| CDX94591 | Canola | nucleus | 24.14 | 20.33 |
| CDX90126 | Canola | nucleus | 23.15 | 20.09 |
| CDY15690 | Canola | nucleus | 23.65 | 20.08 |
| CDY16048 | Canola | nucleus | 25.62 | 17.81 |
| CDY26605 | Canola | nucleus | 25.62 | 17.69 |
| CDY02618 | Canola | nucleus | 28.57 | 17.47 |
| CDY24422 | Canola | nucleus | 25.62 | 17.39 |
| CDY36131 | Canola | nucleus | 25.62 | 17.39 |
| CDY03876 | Canola | nucleus | 25.62 | 17.39 |
| CDY68296 | Canola | nucleus | 27.59 | 17.34 |
| CDX88931 | Canola | nucleus | 28.08 | 17.33 |
| CDY51586 | Canola | nucleus | 25.12 | 17.29 |
| CDY13901 | Canola | nucleus | 28.57 | 17.26 |
| CDX70826 | Canola | nucleus | 28.08 | 17.22 |
| CDY58106 | Canola | nucleus | 28.08 | 17.17 |
| CDY19407 | Canola | nucleus | 25.62 | 16.46 |
| CDY26598 | Canola | nucleus | 14.78 | 15.15 |
| CDY16037 | Canola | nucleus | 14.78 | 15.15 |
| CDY72607 | Canola | nucleus | 23.65 | 14.86 |
| CDX91091 | Canola | nucleus | 24.63 | 14.71 |
| CDX85621 | Canola | nucleus | 24.63 | 14.62 |
| CDX98022 | Canola | nucleus | 5.42 | 5.56 |
| CDY46294 | Canola | nucleus | 3.94 | 5.56 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078G8N5 | UniProt:A0A078G8N5 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDY22810 | ProteinID:CDY22810 | ProteinID:CDY22810.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00021154001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31677 | PANTHER:PTHR31677:SF13 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EE2167 | SEG:seg | : | : | : | : |
Description
BnaA06g02670DBnaA06g02670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8N5]
Coordinates
chrLK032136:-:198676..199367
Molecular Weight (calculated)
22312.9 Da
IEP (calculated)
9.481
GRAVY (calculated)
-0.756
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRGRVSTPV TANHNPSIKE TRFRGVRKRP WGRYAAEIRD PYKKSRVWLG TFDSAVDAAR AYDAAARNLR GPKAKTNFPI ESPPSPPQID PFMDHRLYAG
101: ASSRPTSSSM SSTVESSSGQ RSSVAKPLST TAKRYPRTPP VVPEDCHSDC GSSSSVIDDG DDDIASSSRR REPPSFKFDL NFPPLDDVGL IDGVDDICTD
201: LRL
101: ASSRPTSSSM SSTVESSSGQ RSSVAKPLST TAKRYPRTPP VVPEDCHSDC GSSSSVIDDG DDDIASSSRR REPPSFKFDL NFPPLDDVGL IDGVDDICTD
201: LRL
001: MRRGRGSSAV AGPTVVAAIN GSVKEIRFRG VRKRPWGRFA AEIRDPWKKA RVWLGTFDSA EEAARAYDSA ARNLRGPKAK TNFPIDSSSP PPPNLRFNQI
101: RNQNQNQVDP FMDHRLFTDH QQQFPIVNRP TSSSMSSTVE SFSGPRPTTM KPATTKRYPR TPPVVPEDCH SDCDSSSSVI DDDDDIASSS RRRNPPFQFD
201: LNFPPLDCVD LFNGADDLHC TDLRL
101: RNQNQNQVDP FMDHRLFTDH QQQFPIVNRP TSSSMSSTVE SFSGPRPTTM KPATTKRYPR TPPVVPEDCH SDCDSSSSVI DDDDDIASSS RRRNPPFQFD
201: LNFPPLDCVD LFNGADDLHC TDLRL
Arabidopsis Description
ERF3Uncharacterized protein At1g50640 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV01]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.