Factsheet for PGSC0003DMT400057443

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400035608
PGSC0003DMT400076252

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50640.1	PGSC0003DMT400035608	AT2G45640.1	16429262
AT1G50640.1	PGSC0003DMT400076252	AT4G38130.1	16429262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g064890.1.1	Tomato	nucleus	97.08	97.08
PGSC0003DMT400037359	Potato	mitochondrion, nucleus	75.0	80.72
GSMUA_Achr3P13010_001	Banana	nucleus	43.75	68.63
KRH14810	Soybean	nucleus	54.17	61.61
VIT_12s0059g01460.t01	Wine grape	nucleus	52.08	61.27
CDY37113	Canola	mitochondrion, nucleus	52.5	60.58
KRH73332	Soybean	nucleus	54.17	60.47
GSMUA_Achr4P04060_001	Banana	mitochondrion	39.58	60.13
Bra018864.1-P	Field mustard	nucleus	50.83	60.1
CDY22810	Canola	nucleus	50.83	60.1
AT1G50640.1	Thale cress	mitochondrion, nucleus	55.83	59.56
GSMUA_Achr4P06170_001	Banana	nucleus	45.83	59.46
GSMUA_Achr1P18230_001	Banana	nucleus	45.83	57.89
PGSC0003DMT400001820	Potato	nucleus	45.0	55.67
PGSC0003DMT400036071	Potato	nucleus	37.92	47.89
GSMUA_Achr4P11430_001	Banana	nucleus	31.67	46.34
PGSC0003DMT400076408	Potato	nucleus	28.75	45.1
PGSC0003DMT400068959	Potato	nucleus	32.5	34.82
PGSC0003DMT400058751	Potato	nucleus	29.58	31.42
PGSC0003DMT400033391	Potato	nucleus	29.58	30.87
PGSC0003DMT400035731	Potato	nucleus	34.58	27.95
PGSC0003DMT400056527	Potato	nucleus	18.33	27.5
PGSC0003DMT400005596	Potato	nucleus, plastid	17.92	21.94
PGSC0003DMT400008830	Potato	nucleus	22.08	20.87
PGSC0003DMT400011492	Potato	nucleus	22.08	20.87
PGSC0003DMT400005585	Potato	nucleus, plastid	20.42	16.9
PGSC0003DMT400047887	Potato	nucleus	25.0	15.38
PGSC0003DMT400058356	Potato	nucleus	20.83	14.66

Protein Annotations

EntrezGene:102602477	MapMan:15.5.7.1	Gene3D:3.30.730.10	ProteinID:AET99099	ProteinID:AET99099.1	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	EMBL:JN711505	UniProt:M1C126	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400022305
PGSC:PGSC0003DMG400022305	EnsemblPlants:PGSC0003DMT400057443	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31677	PANTHER:PTHR31677:SF17
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000295ACC1	RefSeq:XP_006346195.1	SEG:seg	:

Description

Ethylene-responsive transcription factor 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400022305]

Coordinates

chr7:+:55079184..55080640

Molecular Weight (calculated)

26245.4 Da

IEP (calculated)

7.932

GRAVY (calculated)

-0.717

Length

240 amino acids

Sequence
(BLAST)

001: MRRGRAAAAA RQVPATEVPV PAPVAGELNG SGGSKEIRFR GVRKRPWGKF AAEIRDPWKK TRVWLGTFDS AEDAARAYDT AARTLRGPKA KTNFPLPSSH
101: HLPPYPHHHQ FNQSINPNDP FVDSRLYSQD HPIVSQRPTS SSMSSTVESF SGPRPPPRQQ TAASVPSRKY PRSPPVVPDD CHSDCDSSSS VVEDGECDND
201: NIASSSFRKP LPFDLNLPAP MDDFGADAYA DDLHCTALCL

Best Arabidopsis Sequence Match ( AT1G50640.1 )
(BLAST)

001: MRRGRGSSAV AGPTVVAAIN GSVKEIRFRG VRKRPWGRFA AEIRDPWKKA RVWLGTFDSA EEAARAYDSA ARNLRGPKAK TNFPIDSSSP PPPNLRFNQI
101: RNQNQNQVDP FMDHRLFTDH QQQFPIVNRP TSSSMSSTVE SFSGPRPTTM KPATTKRYPR TPPVVPEDCH SDCDSSSSVI DDDDDIASSS RRRNPPFQFD
201: LNFPPLDCVD LFNGADDLHC TDLRL

Arabidopsis Description

ERF3Uncharacterized protein At1g50640 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV01]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.