Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P13010_001 | Banana | nucleus | 58.92 | 71.24 |
| GSMUA_Achr4P04060_001 | Banana | mitochondrion | 54.05 | 63.29 |
| GSMUA_Achr1P18230_001 | Banana | nucleus | 61.62 | 60.0 |
| VIT_12s0059g01460.t01 | Wine grape | nucleus | 58.92 | 53.43 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.81 | 52.78 |
| KRH14810 | Soybean | nucleus | 60.0 | 52.61 |
| Bra018864.1-P | Field mustard | nucleus | 56.76 | 51.72 |
| CDY22810 | Canola | nucleus | 56.22 | 51.23 |
| KRH73332 | Soybean | nucleus | 59.46 | 51.16 |
| CDY37113 | Canola | mitochondrion, nucleus | 56.76 | 50.48 |
| GSMUA_Achr7P00350_001 | Banana | nucleus | 29.73 | 50.0 |
| Solyc10g006130.1.1 | Tomato | mitochondrion, nucleus | 58.92 | 49.32 |
| PGSC0003DMT400037359 | Potato | mitochondrion, nucleus | 57.84 | 47.98 |
| GSMUA_Achr4P11430_001 | Banana | nucleus | 42.16 | 47.56 |
| AT1G50640.1 | Thale cress | mitochondrion, nucleus | 57.84 | 47.56 |
| Solyc07g064890.1.1 | Tomato | nucleus | 60.0 | 46.25 |
| PGSC0003DMT400057443 | Potato | nucleus | 59.46 | 45.83 |
| GSMUA_Achr7P03640_001 | Banana | nucleus | 40.0 | 44.58 |
| GSMUA_Achr8P33590_001 | Banana | nucleus | 42.16 | 41.71 |
| GSMUA_Achr3P29290_001 | Banana | nucleus | 35.68 | 41.51 |
| GSMUA_Achr1P25890_001 | Banana | nucleus | 34.59 | 40.25 |
| GSMUA_Achr8P15820_001 | Banana | nucleus | 35.68 | 38.82 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.76 | 38.42 |
| GSMUA_Achr8P06870_001 | Banana | nucleus | 36.76 | 36.76 |
| GSMUA_Achr5P26850_001 | Banana | nucleus | 36.76 | 35.6 |
| GSMUA_Achr6P01440_001 | Banana | nucleus | 34.59 | 34.41 |
| GSMUA_Achr4P06660_001 | Banana | nucleus | 35.68 | 34.38 |
| GSMUA_Achr3P23710_001 | Banana | nucleus | 37.3 | 34.16 |
| GSMUA_Achr6P00240_001 | Banana | nucleus | 31.35 | 33.72 |
| GSMUA_Achr9P11480_001 | Banana | nucleus | 41.08 | 33.63 |
| GSMUA_Achr8P15830_001 | Banana | nucleus | 35.68 | 33.17 |
| GSMUA_Achr8P03550_001 | Banana | nucleus | 37.84 | 32.41 |
| GSMUA_Achr6P00250_001 | Banana | nucleus | 41.62 | 32.22 |
| GSMUA_Achr4P23620_001 | Banana | nucleus | 37.84 | 31.25 |
| GSMUA_Achr6P35320_001 | Banana | nucleus | 23.78 | 30.77 |
| GSMUA_Achr10P... | Banana | nucleus | 36.76 | 30.63 |
| GSMUA_Achr5P09940_001 | Banana | mitochondrion | 36.76 | 28.57 |
| GSMUA_Achr4P33270_001 | Banana | nucleus | 40.0 | 27.82 |
| GSMUA_Achr7P17910_001 | Banana | nucleus | 24.32 | 27.78 |
| GSMUA_Achr3P19420_001 | Banana | nucleus | 36.76 | 23.94 |
| GSMUA_Achr3P02360_001 | Banana | nucleus | 30.81 | 21.19 |
| GSMUA_Achr9P01870_001 | Banana | nucleus | 30.81 | 19.79 |
| GSMUA_Achr10P... | Banana | nucleus | 27.57 | 19.54 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.11 | 18.57 |
| GSMUA_Achr8P30180_001 | Banana | nucleus | 29.73 | 17.63 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr4G06170_001 | EnsemblPlants:GSMUA_Achr4P06170_001 | EnsemblPlants:GSMUA_Achr4T06170_001 |
| InterPro:IPR001471 | InterPro:IPR036955 | UniProt:M0SLI4 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31677 | PANTHER:PTHR31677:SF13 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000294A79F | SEG:seg |
Description
Putative Ethylene-responsive transcription factor 3 [Source:GMGC_GENE;Acc:GSMUA_Achr4G06170_001]
Coordinates
chr4:-:4694183..4695011
Molecular Weight (calculated)
19803.2 Da
IEP (calculated)
8.777
GRAVY (calculated)
-0.457
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKGRAPAVA AAAAAMTVEV RYRGVRKRPW GRFAAEIRDP WKKARVWLGT FDSAEDAARA YDAAAIAFRG PKAKTNFPCS PSSPPPPRPT CSSLSSTVES
101: FSGPRITAAA APTHVRASHR RRQSNPPPQR VLVGEEDCHS DCGSSSSVVD DDNGDIASAC PQPLPFDLNL LPPADDDFHA VALNL
101: FSGPRITAAA APTHVRASHR RRQSNPPPQR VLVGEEDCHS DCGSSSSVVD DDNGDIASAC PQPLPFDLNL LPPADDDFHA VALNL
001: MRRGRGSSAV AGPTVVAAIN GSVKEIRFRG VRKRPWGRFA AEIRDPWKKA RVWLGTFDSA EEAARAYDSA ARNLRGPKAK TNFPIDSSSP PPPNLRFNQI
101: RNQNQNQVDP FMDHRLFTDH QQQFPIVNRP TSSSMSSTVE SFSGPRPTTM KPATTKRYPR TPPVVPEDCH SDCDSSSSVI DDDDDIASSS RRRNPPFQFD
201: LNFPPLDCVD LFNGADDLHC TDLRL
101: RNQNQNQVDP FMDHRLFTDH QQQFPIVNRP TSSSMSSTVE SFSGPRPTTM KPATTKRYPR TPPVVPEDCH SDCDSSSSVI DDDDDIASSS RRRNPPFQFD
201: LNFPPLDCVD LFNGADDLHC TDLRL
Arabidopsis Description
ERF3Uncharacterized protein At1g50640 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV01]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.