Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0122000-01 | Rice | nucleus, plastid | 79.61 | 79.61 |
| Zm00001d015058_P002 | Maize | cytosol, mitochondrion, nucleus, plastid | 78.29 | 78.29 |
| EES06194 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 78.29 | 78.29 |
| KRH48306 | Soybean | cytosol | 35.53 | 75.0 |
| VIT_15s0048g01290.t01 | Wine grape | nucleus | 74.34 | 74.34 |
| TraesCSU01G117100.1 | Wheat | cytosol | 73.03 | 74.0 |
| TraesCS6A01G067100.1 | Wheat | nucleus | 73.03 | 74.0 |
| KRH65197 | Soybean | nucleus | 72.37 | 72.85 |
| TraesCS6B01G090300.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 72.37 | 72.37 |
| Bra004926.1-P | Field mustard | mitochondrion | 69.08 | 69.08 |
| CDY18913 | Canola | mitochondrion | 69.08 | 69.08 |
| CDX74753 | Canola | mitochondrion | 69.08 | 68.63 |
| PGSC0003DMT400035608 | Potato | cytosol | 69.74 | 67.95 |
| Solyc05g047690.2.1 | Tomato | nucleus | 69.74 | 67.95 |
| AT2G45640.1 | Thale cress | cytosol | 64.47 | 64.47 |
| CDY60684 | Canola | mitochondrion | 33.55 | 63.75 |
| CDY53883 | Canola | cytosol | 23.03 | 57.38 |
| HORVU6Hr1G012050.4 | Barley | plastid | 72.37 | 55.0 |
| Zm00001d053919_P001 | Maize | plastid | 73.68 | 53.08 |
Protein Annotations
| MapMan:12.3.2.4.3 | Gene3D:3.10.20.550 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005730 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 |
| GO:GO:0009737 | EnsemblPlantsGene:GSMUA_Achr3G12560_001 | EnsemblPlants:GSMUA_Achr3P12560_001 | EnsemblPlants:GSMUA_Achr3T12560_001 | UniProt:M0SE23 | PFAM:PF06487 |
| PANTHER:PTHR13082 | InterPro:SAP18 | UniParc:UPI000295127D | SEG:seg | : | : |
Description
Histone deacetylase complex subunit SAP18 [Source:GMGC_GENE;Acc:GSMUA_Achr3G12560_001]
Coordinates
chr3:+:9317166..9322719
Molecular Weight (calculated)
17023.4 Da
IEP (calculated)
9.978
GRAVY (calculated)
-0.595
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGVVEAQNR QARPGPLPQP RGPPPTARSR EPIDREKTCP LLLRVFTKVG GHHPAEDFAV RGKEPKDEVQ IYTWKDATLR ELTDLVKEVS QEARKRDAKL
101: SFAFVYPDKN GRFVVRPVGM TYSHGNGRRL DDAKTLAELG FQIGDYLSVA IL
101: SFAFVYPDKN GRFVVRPVGM TYSHGNGRRL DDAKTLAELG FQIGDYLSVA IL
001: MAEAARRQGG GRPLPPPPRG VNQQPPRPKP EPVDREKTCP LLLRVFTKSG GHHTSEDYAV RGKEPKDEVQ IYTWKDASLR ELTDLVKEVS VAARRRNARL
101: SFAFVYPNNK GGYNVREVGE TMAYPNRKQP DDSKTLSELP FEIGDYLDVA IY
101: SFAFVYPNNK GGYNVREVGE TMAYPNRKQP DDSKTLSELP FEIGDYLDVA IY
Arabidopsis Description
SAP18SAP18 [Source:UniProtKB/TrEMBL;Acc:A0A178VW39]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.