Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G117100.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS6B01G090300.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 98.0 | 96.71 |
| Zm00001d015058_P002 | Maize | cytosol, mitochondrion, nucleus, plastid | 87.33 | 86.18 |
| EES06194 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 87.33 | 86.18 |
| Os02t0122000-01 | Rice | nucleus, plastid | 84.0 | 82.89 |
| HORVU6Hr1G012050.4 | Barley | plastid | 98.67 | 74.0 |
| GSMUA_Achr3P12560_001 | Banana | cytosol | 74.0 | 73.03 |
| KRH48306 | Soybean | cytosol | 34.0 | 70.83 |
| VIT_15s0048g01290.t01 | Wine grape | nucleus | 70.67 | 69.74 |
| KRH65197 | Soybean | nucleus | 68.67 | 68.21 |
| Solyc05g047690.2.1 | Tomato | nucleus | 68.67 | 66.03 |
| PGSC0003DMT400035608 | Potato | cytosol | 68.0 | 65.38 |
| Bra004926.1-P | Field mustard | mitochondrion | 66.0 | 65.13 |
| CDY18913 | Canola | mitochondrion | 66.0 | 65.13 |
| CDX74753 | Canola | mitochondrion | 66.0 | 64.71 |
| AT2G45640.1 | Thale cress | cytosol | 62.0 | 61.18 |
| Zm00001d053919_P001 | Maize | plastid | 82.67 | 58.77 |
| CDY60684 | Canola | mitochondrion | 31.33 | 58.75 |
| CDY53883 | Canola | cytosol | 21.33 | 52.46 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G067100.1 | EnsemblPlantsGene:TraesCS6A01G067100 | Gene3D:3.10.20.550 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009628 | GO:GO:0009651 |
| GO:GO:0009719 | GO:GO:0009737 | InterPro:SAP18 | PANTHER:PTHR13082 | PFAM:PF06487 | SEG:seg |
| MapMan:12.3.2.4.3 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:35642879..35645863
Molecular Weight (calculated)
16869.4 Da
IEP (calculated)
9.978
GRAVY (calculated)
-0.613
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGMGEMSMR PRPGPPMHRG PPPMARPRPE PIDREKTCPL LLRVFTKVGG HHLNEEFSER GKEPKDEVQI YTWKDATLRE LTDLVKEVAL PARKRNARLS
101: FAFVYPDKNG RFVVKQVGST FSYGHGRGDD AKSLGDLGFQ IGDYLSVSIM
101: FAFVYPDKNG RFVVKQVGST FSYGHGRGDD AKSLGDLGFQ IGDYLSVSIM
001: MAEAARRQGG GRPLPPPPRG VNQQPPRPKP EPVDREKTCP LLLRVFTKSG GHHTSEDYAV RGKEPKDEVQ IYTWKDASLR ELTDLVKEVS VAARRRNARL
101: SFAFVYPNNK GGYNVREVGE TMAYPNRKQP DDSKTLSELP FEIGDYLDVA IY
101: SFAFVYPNNK GGYNVREVGE TMAYPNRKQP DDSKTLSELP FEIGDYLDVA IY
Arabidopsis Description
SAP18SAP18 [Source:UniProtKB/TrEMBL;Acc:A0A178VW39]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.