Factsheet for Os02t0122000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 3
mitochondrion 4
golgi 1
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0214900-01
Os02t0215200-02
Os04t0654700-02
Os06t0583400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45640.1	Os04t0654700-02	AT1G22920.1	21798944
AT2G45640.1	Os02t0214900-01	AT4G38130.1	16429262
AT2G45640.1	Os02t0215200-02	AT4G38130.1	16429262
AT2G45640.1	Os06t0583400-01	AT4G38130.1	16429262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015058_P002	Maize	cytosol, mitochondrion, nucleus, plastid	88.82	88.82
EES06194	Sorghum	cytosol, mitochondrion, nucleus, plastid	88.82	88.82
TraesCSU01G117100.1	Wheat	cytosol	82.89	84.0
TraesCS6A01G067100.1	Wheat	nucleus	82.89	84.0
TraesCS6B01G090300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	81.58	81.58
GSMUA_Achr3P12560_001	Banana	cytosol	79.61	79.61
VIT_15s0048g01290.t01	Wine grape	nucleus	75.0	75.0
KRH48306	Soybean	cytosol	35.53	75.0
KRH65197	Soybean	nucleus	72.37	72.85
PGSC0003DMT400035608	Potato	cytosol	71.05	69.23
Solyc05g047690.2.1	Tomato	nucleus	71.05	69.23
CDX74753	Canola	mitochondrion	69.08	68.63
Bra004926.1-P	Field mustard	mitochondrion	68.42	68.42
CDY18913	Canola	mitochondrion	68.42	68.42
AT2G45640.1	Thale cress	cytosol	66.45	66.45
HORVU6Hr1G012050.4	Barley	plastid	82.89	63.0
CDY60684	Canola	mitochondrion	32.89	62.5
Zm00001d053919_P001	Maize	plastid	83.55	60.19
CDY53883	Canola	cytosol	22.37	55.74

Protein Annotations

MapMan:12.3.2.4.3	Gene3D:3.10.20.550	EntrezGene:4328127	EMBL:AK121653	ProteinID:BAD07609.1	ProteinID:BAF07637.1
ProteinID:BAS76717.1	ProteinID:EAZ21546.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009737
GO:GO:0009987	InterPro:Hist_deAcase_cplx_SAP18	EnsemblPlantsGene:Os02g0122000	EnsemblPlants:Os02t0122000-01	PFAM:PF06487	PIRSF:PIRSF037637
PANTHER:PTHR13082	UniProt:Q6ZH90	InterPro:SAP18	UniParc:UPI000023674D	RefSeq:XP_015626310.1	RefSeq:XP_015626311.1
RefSeq:XP_015626312.1	SEG:seg	:	:	:	:

Description

Similar to P18. (Os02t0122000-01)

Coordinates

chr2:-:1158885..1161181

Molecular Weight (calculated)

17144.7 Da

IEP (calculated)

10.000

GRAVY (calculated)

-0.522

Length

152 amino acids

Sequence
(BLAST)

001: MAGRGEMPMR PVRPGPPMQY RGPPPMARAR VEPVDREKTC PLLLRVFTKV GGHHQNEEFA VRGKEPKDEV QIYTWKDATL RELTDLVKEV ALAARKRNAR
101: LSFAFVYPDK HGRFVVKEVG STFSYGHGRG DDAKTLAELG FQIGDYLSVA IY

Best Arabidopsis Sequence Match ( AT2G45640.1 )
(BLAST)

001: MAEAARRQGG GRPLPPPPRG VNQQPPRPKP EPVDREKTCP LLLRVFTKSG GHHTSEDYAV RGKEPKDEVQ IYTWKDASLR ELTDLVKEVS VAARRRNARL
101: SFAFVYPNNK GGYNVREVGE TMAYPNRKQP DDSKTLSELP FEIGDYLDVA IY

Arabidopsis Description

SAP18SAP18 [Source:UniProtKB/TrEMBL;Acc:A0A178VW39]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.