Factsheet for TraesCS6B01G090300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol, nucleus, mitochondrion

Predictor Summary:

plastid 2
mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G504600.1
TraesCS2D01G505300.1
TraesCS6A01G184100.2
TraesCS6B01G212600.3
TraesCS6D01G171000.1
TraesCS7A01G365600.3
TraesCS7B01G261800.1
TraesCS7D01G356800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45640.1	TraesCS2A01G504600.1	AT1G22920.1	21798944
AT2G45640.1	TraesCS2D01G505300.1	AT1G22920.1	21798944
AT2G45640.1	TraesCS6A01G184100.2	AT4G38130.1	16429262
AT2G45640.1	TraesCS6B01G212600.3	AT4G38130.1	16429262
AT2G45640.1	TraesCS6D01G171000.1	AT4G38130.1	16429262
AT2G45640.1	TraesCS7A01G365600.3	AT4G38130.1	16429262
AT2G45640.1	TraesCS7B01G261800.1	AT4G38130.1	16429262
AT2G45640.1	TraesCS7D01G356800.1	AT4G38130.1	16429262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G117100.1	Wheat	cytosol	96.71	98.0
TraesCS6A01G067100.1	Wheat	nucleus	96.71	98.0
Zm00001d015058_P002	Maize	cytosol, mitochondrion, nucleus, plastid	86.18	86.18
EES06194	Sorghum	cytosol, mitochondrion, nucleus, plastid	86.18	86.18
Os02t0122000-01	Rice	nucleus, plastid	81.58	81.58
HORVU6Hr1G012050.4	Barley	plastid	96.05	73.0
GSMUA_Achr3P12560_001	Banana	cytosol	72.37	72.37
KRH48306	Soybean	cytosol	33.55	70.83
VIT_15s0048g01290.t01	Wine grape	nucleus	68.42	68.42
KRH65197	Soybean	nucleus	67.76	68.21
Solyc05g047690.2.1	Tomato	nucleus	67.76	66.03
PGSC0003DMT400035608	Potato	cytosol	67.11	65.38
Bra004926.1-P	Field mustard	mitochondrion	65.13	65.13
CDY18913	Canola	mitochondrion	65.13	65.13
CDX74753	Canola	mitochondrion	65.13	64.71
AT2G45640.1	Thale cress	cytosol	61.18	61.18
Zm00001d053919_P001	Maize	plastid	81.58	58.77
CDY60684	Canola	mitochondrion	30.92	58.75
CDY53883	Canola	cytosol	21.05	52.46

Protein Annotations

EnsemblPlants:TraesCS6B01G090300.1	EnsemblPlantsGene:TraesCS6B01G090300	Gene3D:3.10.20.550	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0006950	GO:GO:0008150	GO:GO:0009628	GO:GO:0009651
GO:GO:0009719	GO:GO:0009737	InterPro:SAP18	PANTHER:PTHR13082	PFAM:PF06487	SEG:seg
MapMan:12.3.2.4.3	:	:	:	:	:

Description

No Description!

Coordinates

chr6B:+:66453833..66456520

Molecular Weight (calculated)

17097.7 Da

IEP (calculated)

9.984

GRAVY (calculated)

-0.579

Length

152 amino acids

Sequence
(BLAST)

001: MAGMGDMQMR PRPGPPMHRG PPPMARPRPQ PIDREKTCPL LLRVFTKVGG HHLNEEFSER GKEPKDEVQI YTWKDATLRE LTDLVKEVAL PARKRNARLS
101: FAFVYPDKNG RFVVKQVGST FSYGHGRGDD AKSLGDLGFQ VCIGDYLSVS IM

Best Arabidopsis Sequence Match ( AT2G45640.1 )
(BLAST)

001: MAEAARRQGG GRPLPPPPRG VNQQPPRPKP EPVDREKTCP LLLRVFTKSG GHHTSEDYAV RGKEPKDEVQ IYTWKDASLR ELTDLVKEVS VAARRRNARL
101: SFAFVYPNNK GGYNVREVGE TMAYPNRKQP DDSKTLSELP FEIGDYLDVA IY

Arabidopsis Description

SAP18SAP18 [Source:UniProtKB/TrEMBL;Acc:A0A178VW39]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.