Factsheet for Solyc05g047690.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g073150.2.1
Solyc07g064890.1.1
Solyc09g091440.2.1
Solyc10g006130.1.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45640.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT2G45640.1	Solyc11g017300.1.1	AT1G22920.1	21798944
AT2G45640.1	Solyc07g064890.1.1	AT1G50640.1	16429262
AT2G45640.1	Solyc10g006130.1.1	AT1G50640.1	16429262
AT2G45640.1	Solyc09g091440.2.1	AT4G38130.1	16429262

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035608	Potato	cytosol	99.36	99.36
VIT_15s0048g01290.t01	Wine grape	nucleus	73.08	75.0
CDX74753	Canola	mitochondrion	71.79	73.2
KRH65197	Soybean	nucleus	70.51	72.85
Bra004926.1-P	Field mustard	mitochondrion	69.87	71.71
CDY18913	Canola	mitochondrion	69.87	71.71
Os02t0122000-01	Rice	nucleus, plastid	69.23	71.05
KRH48306	Soybean	cytosol	32.69	70.83
AT2G45640.1	Thale cress	cytosol	68.59	70.39
GSMUA_Achr3P12560_001	Banana	cytosol	67.95	69.74
EES06194	Sorghum	cytosol, mitochondrion, nucleus, plastid	67.31	69.08
Zm00001d015058_P002	Maize	cytosol, mitochondrion, nucleus, plastid	67.31	69.08
TraesCS6A01G067100.1	Wheat	nucleus	66.03	68.67
TraesCSU01G117100.1	Wheat	cytosol	66.03	68.67
TraesCS6B01G090300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	66.03	67.76
CDY60684	Canola	mitochondrion	33.33	65.0
CDY53883	Canola	cytosol	23.08	59.02
HORVU6Hr1G012050.4	Barley	plastid	66.03	51.5
Zm00001d053919_P001	Maize	plastid	62.82	46.45

Protein Annotations

MapMan:12.3.2.4.3	Gene3D:3.10.20.550	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009737
GO:GO:0009987	InterPro:Hist_deAcase_cplx_SAP18	UniProt:K4C101	PFAM:PF06487	PIRSF:PIRSF037637	PANTHER:PTHR13082
InterPro:SAP18	EnsemblPlantsGene:Solyc05g047690.2	EnsemblPlants:Solyc05g047690.2.1	UniParc:UPI0002766CA7	SEG:seg	:

Description

No Description!

Coordinates

chr5:+:59171690..59176708

Molecular Weight (calculated)

17831.6 Da

IEP (calculated)

10.391

GRAVY (calculated)

-0.597

Length

156 amino acids

Sequence
(BLAST)

001: MADVQRRGRP LPPPPPRGPH GPPPQRIAPR PVPVDREKTC PLLLRVFTKV GGHHNVNEFA VRGKEPKDEV QIYTWMDATL RELTDLVKEV APEARRRDAI
101: LSFAFVYPDK RGRFVVREVG TTFSYPNMRR PDNGSKTLSE LKFQIGDYLD VAIMFQ

Best Arabidopsis Sequence Match ( AT2G45640.1 )
(BLAST)

001: MAEAARRQGG GRPLPPPPRG VNQQPPRPKP EPVDREKTCP LLLRVFTKSG GHHTSEDYAV RGKEPKDEVQ IYTWKDASLR ELTDLVKEVS VAARRRNARL
101: SFAFVYPNNK GGYNVREVGE TMAYPNRKQP DDSKTLSELP FEIGDYLDVA IY

Arabidopsis Description

SAP18SAP18 [Source:UniProtKB/TrEMBL;Acc:A0A178VW39]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.