Factsheet for Solyc09g091440.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g047690.2.1
Solyc10g075030.1.1	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38130.1	Solyc05g047690.2.1	AT2G45640.1	16429262
AT4G38130.1	Solyc10g075030.1.1	AT4G32010.1	23362207
AT4G38130.1	Solyc10g075030.1.1	AT4G32010.1	23362207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076252	Potato	nucleus	98.8	91.79
VIT_03s0038g04240.t01	Wine grape	nucleus	83.73	83.07
VIT_14s0006g01820.t01	Wine grape	nucleus	82.33	81.67
Bra040131.1-P	Field mustard	nucleus	81.93	81.27
CDY21119	Canola	nucleus	81.73	81.08
KRH60609	Soybean	nucleus	80.72	80.89
CDY30008	Canola	nucleus	81.53	80.88
KRH51318	Soybean	nucleus	80.12	80.28
AT4G38130.1	Thale cress	nucleus	80.72	80.24
KRH77972	Soybean	nucleus	79.52	79.68
KRH27562	Soybean	nucleus	79.32	79.48
Os06t0583400-01	Rice	nucleus	79.32	76.25
KXG20269	Sorghum	nucleus	78.31	75.29
TraesCS7D01G356800.1	Wheat	nucleus	77.31	74.18
HORVU7Hr1G085870.2	Barley	nucleus	77.11	73.99
TraesCS7B01G261800.1	Wheat	nucleus	77.11	73.99
GSMUA_Achr5P06320_001	Banana	nucleus	68.67	73.71
TraesCS7A01G365600.3	Wheat	nucleus	77.11	73.42
GSMUA_Achr2P19590_001	Banana	nucleus	66.87	73.19
GSMUA_AchrUn_...	Banana	cytosol	57.83	73.1
Zm00001d046388_P001	Maize	nucleus	75.3	70.62
GSMUA_Achr8P04190_001	Banana	cytosol, nucleus, plasma membrane	57.83	66.82
GSMUA_Achr1P14440_001	Banana	cytosol	53.61	64.18
Solyc06g071680.2.1	Tomato	cytosol	58.23	61.57
Solyc03g112410.1.1	Tomato	cytosol	53.61	59.47
Solyc11g067020.1.1	Tomato	cytosol	49.2	56.98
Solyc08g065350.2.1	Tomato	cytosol	17.47	25.07
Solyc01g009110.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus, plastid	12.85	24.15
Solyc06g074080.2.1	Tomato	cytosol	16.27	21.04
Solyc03g115150.2.1	Tomato	cytosol	19.08	14.68
Solyc03g119730.2.1	Tomato	nucleus	17.07	13.93

Protein Annotations

MapMan:12.3.2.1.1	MapMan:12.3.2.4.1	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787
GO:GO:0019538	GO:GO:0032041	GO:GO:0046872	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_1
InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	UniProt:K4CWH0	PFAM:PF00850	PIRSF:PIRSF037913
PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF178	SUPFAM:SSF52768	EnsemblPlantsGene:Solyc09g091440.2
EnsemblPlants:Solyc09g091440.2.1	UniParc:UPI000276B3A9	InterPro:Ureohydrolase_dom_sf	SEG:seg	:	:

Description

Histone deacetylase 19 [Source:Projected from Arabidopsis thaliana (AT4G38130) UniProtKB/Swiss-Prot;Acc:O22446]

Coordinates

chr9:-:70723399..70729325

Molecular Weight (calculated)

55703.4 Da

IEP (calculated)

5.245

GRAVY (calculated)

-0.545

Length

498 amino acids

Sequence
(BLAST)

001: MDVGGNSLAS GADGKKRKVS YFYDPEVGNY YYGQGHPMKP HRMRMTHALL AHYGLLQHMH VLKPNPARDK DLCRFHADDY IAFLRSVTPE TQQDQLRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGAV KLNHGHCDIA VNWAGGLHHA KKCEASGFCY VNDIVLAILE LLKVHERVLY VDIDIHHGDG VEEAFYTTDR
201: VMTVSFHKFG DYFPGTGDVR DIGYGSGKYY SLNVPLDDGI DDESYQSLFK PIMGKVMEVF KPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKYMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGI ELEDKMPQHE YYEYFGPDYT LHVAPSNMEN KNSRQILEDI RSKLLDNLSK LQHAPSVQFQ ERPPDTELPE
401: ADEDLEDADS RWDADSDTNG EERKPNPSRV RREHVEPEGK GTDDMKTEEH LREVESTFAE STSLKGGNSS STLIDGGQIK VEQGNSNKLF DQPTDIIS

Best Arabidopsis Sequence Match ( AT4G38130.1 )
(BLAST)

001: MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYATDR
201: VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI DDESYHLLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTETPE
401: VDEDQEDGDK RWDPDSDMDV DDDRKPIPSR VKREAVEPDT KDKDGLKGIM ERGKGCEVEV DESGSTKVTG VNPVGVEEAS VKMEEEGTNK GGAEQAFPPK
501: T

Arabidopsis Description

HDA19Histone deacetylase 19 [Source:UniProtKB/Swiss-Prot;Acc:O22446]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.