CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27562	Soybean	nucleus	96.18	96.18
Zm00001d016381_P001	Maize	nucleus	67.2	81.86
KRH60609	Soybean	nucleus	79.68	79.68
Solyc09g091440.2.1	Tomato	nucleus	79.68	79.52
KRH51318	Soybean	nucleus	78.47	78.47
GSMUA_Achr2P19590_001	Banana	nucleus	69.82	76.26
GSMUA_Achr5P06320_001	Banana	nucleus	70.62	75.65
EES04741	Sorghum	nucleus	77.87	74.85
Os06t0583400-01	Rice	nucleus	77.87	74.71
Zm00001d053595_P004	Maize	nucleus	77.06	74.08
TraesCS6A01G184100.2	Wheat	nucleus	77.06	73.8
HORVU6Hr1G038710.1	Barley	cytosol	76.86	73.75
KXG20269	Sorghum	nucleus	76.66	73.55
TraesCS6B01G212600.3	Wheat	nucleus	76.86	73.46
HORVU7Hr1G085870.2	Barley	nucleus	76.66	73.41
TraesCS7D01G356800.1	Wheat	nucleus	76.66	73.41
PGSC0003DMT400076252	Potato	nucleus	79.07	73.32
TraesCS7B01G261800.1	Wheat	nucleus	76.26	73.03
GSMUA_AchrUn_...	Banana	cytosol	57.55	72.59
TraesCS7A01G365600.3	Wheat	nucleus	76.26	72.47
Zm00001d046388_P001	Maize	nucleus	74.65	69.87
Os02t0215200-02	Rice	cytoskeleton, cytosol, nucleus	70.83	69.16
Zm00001d014076_P001	Maize	cytosol, mitochondrion, nucleus	13.28	68.04
Os02t0214900-01	Rice	cytoskeleton, cytosol, nucleus	69.42	67.65
TraesCS6D01G171000.1	Wheat	golgi	77.06	66.72
KRH16462	Soybean	nucleus	10.46	66.67
GSMUA_Achr8P04190_001	Banana	cytosol, nucleus, plasma membrane	57.75	66.59
KRH54336	Soybean	cytosol, nucleus, plastid	21.13	65.62
GSMUA_Achr1P14440_001	Banana	cytosol	52.31	62.5
KRH03236	Soybean	nucleus	59.15	62.29
KRH63609	Soybean	cytosol	57.95	61.94
KRH57122	Soybean	nucleus	58.95	61.55
KRH30495	Soybean	cytosol	49.9	57.81
KRH25183	Soybean	cytosol	49.9	57.81
KRH54335	Soybean	cytosol, nucleus, plastid	25.75	54.7
KRH63610	Soybean	cytosol	20.32	51.27
Zm00001d039202_P001	Maize	nucleus	16.7	50.0
Zm00001d018346_P001	Maize	mitochondrion	20.72	46.61
KRH05486	Soybean	cytosol	17.5	25.0
KRH56687	Soybean	nucleus	16.9	20.14
KRH26679	Soybean	cytosol	15.29	19.95
KRH59585	Soybean	plastid	15.49	18.33
KRH03799	Soybean	nucleus	17.5	16.02
KRH56821	Soybean	nucleus	21.13	16.01
KRH03123	Soybean	cytosol	20.93	15.85

Protein Annotations

EntrezGene:100779296	MapMan:12.3.2.1.1	MapMan:12.3.2.4.1	Gene3D:3.40.800.20	EMBL:ACUP02000686	EnsemblPlantsGene:GLYMA_01G245100
GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0046872
GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	UniProt:I1JB12
InterPro:IPR037138	EnsemblPlants:KRH77972	ProteinID:KRH77972	ProteinID:KRH77972.1	ProteinID:KRH77973.1	PFAM:PF00850
PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF178	SUPFAM:SSF52768
UniParc:UPI0002337B22	InterPro:Ureohydrolase_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:56739767..56746111

Molecular Weight (calculated)

56289.4 Da

IEP (calculated)

5.260

GRAVY (calculated)

-0.526

Length

497 amino acids

Sequence
(BLAST)

001: MESGGNSLPS GSDGVKRKVS YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPMAAKDR DLCKFHADDY VAFLRGITPE TQQDQLRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGAL KLNHGVCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKIHERVLY VDIDIHHGDG VEEAFYTTDR
201: VMTVSFHKFG DYFPGTGDIR DIGYAKGKYY SLNVPLDDGI DDESYQSLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVRYMRSFN
301: VPLLLLGGGG YTIRNVARCW CFETSVALGI ELDDKMPQHE YYEYFGPDYT LHVAPSNMEN KNSRQLLDEI RAKLLDNLSR LQHAPSVPFQ ERPPDAELLE
401: RDEDQDDRDE RWDPDSDREV GDDSNPVRRR VKSECVDAED KDTESYHKHL DCGRDYLTPF KEISCSKVSG VYSMAVDEPC IKEEQDNLKE LSDHRPR

Best Arabidopsis Sequence Match ( AT4G38130.1 )
(BLAST)

001: MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYATDR
201: VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI DDESYHLLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTETPE
401: VDEDQEDGDK RWDPDSDMDV DDDRKPIPSR VKREAVEPDT KDKDGLKGIM ERGKGCEVEV DESGSTKVTG VNPVGVEEAS VKMEEEGTNK GGAEQAFPPK
501: T

Arabidopsis Description

HDA19Histone deacetylase 19 [Source:UniProtKB/Swiss-Prot;Acc:O22446]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.