Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| KRH26679 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G08460.1 | KRH26679 | AT1G08460.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_06s0080g00210.t01 | Wine grape | nucleus | 71.39 | 78.16 |
| PGSC0003DMT400015085 | Potato | cytoskeleton, cytosol, nucleus | 75.33 | 75.73 |
| Solyc06g074080.2.1 | Tomato | cytosol | 74.54 | 73.77 |
| AT1G08460.1 | Thale cress | cytosol | 66.67 | 67.37 |
| EES19606 | Sorghum | cytosol | 68.5 | 66.92 |
| Bra031628.1-P | Field mustard | cytosol | 67.72 | 66.84 |
| HORVU1Hr1G074110.1 | Barley | cytosol | 67.98 | 66.58 |
| CDY06315 | Canola | cytosol | 66.93 | 66.06 |
| TraesCS1B01G284500.1 | Wheat | cytosol, nucleus, plastid | 67.98 | 65.9 |
| CDY22682 | Canola | cytosol | 66.67 | 65.8 |
| TraesCS1A01G275300.1 | Wheat | cytosol, nucleus, plastid | 67.19 | 65.47 |
| TraesCS1D01G274900.1 | Wheat | cytosol, nucleus, plastid | 60.63 | 63.11 |
| Zm00001d010162_P002 | Maize | cytosol | 53.81 | 36.41 |
| Zm00001d010152_P002 | Maize | cytosol | 53.81 | 36.41 |
| KRH56687 | Soybean | nucleus | 29.66 | 27.1 |
| KRH59585 | Soybean | plastid | 25.72 | 23.33 |
| KRH54336 | Soybean | cytosol, nucleus, plastid | 9.71 | 23.12 |
| KRH03799 | Soybean | nucleus | 29.13 | 20.44 |
| KRH30495 | Soybean | cytosol | 21.26 | 18.88 |
| KRH25183 | Soybean | cytosol | 21.26 | 18.88 |
| KRH63609 | Soybean | cytosol | 21.26 | 17.42 |
| KRH03236 | Soybean | nucleus | 21.0 | 16.95 |
| KRH57122 | Soybean | nucleus | 20.73 | 16.6 |
| KRH03123 | Soybean | cytosol | 28.08 | 16.31 |
| KRH27562 | Soybean | nucleus | 20.73 | 15.9 |
| KRH56821 | Soybean | nucleus | 27.3 | 15.85 |
| KRH05486 | Soybean | cytosol | 14.44 | 15.8 |
| KRH60609 | Soybean | nucleus | 20.21 | 15.49 |
| KRH51318 | Soybean | nucleus | 20.21 | 15.49 |
| KRH77972 | Soybean | nucleus | 19.95 | 15.29 |
| KRH63610 | Soybean | cytosol | 7.87 | 15.23 |
| GSMUA_Achr7P09050_001 | Banana | cytosol | 10.76 | 14.59 |
| KRH54335 | Soybean | cytosol, nucleus, plastid | 8.92 | 14.53 |
| GSMUA_Achr7P09060_001 | Banana | mitochondrion | 1.31 | 9.62 |
| Os05t0440100-02 | Rice | cytosol | 1.84 | 2.55 |
| KRH16462 | Soybean | nucleus | 0.0 | 0.0 |
Protein Annotations
| EntrezGene:100820007 | MapMan:12.3.2.1.2 | Gene3D:3.40.800.20 | EMBL:ACUP02007735 | EnsemblPlantsGene:GLYMA_12G188200 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006325 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016569 | GO:GO:0016575 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0032041 | GO:GO:0070932 | InterPro:His_deacetylse | InterPro:His_deacetylse_dom |
| InterPro:His_deacetylse_dom_sf | UniProt:I1LTZ2 | InterPro:IPR037138 | EnsemblPlants:KRH26679 | ProteinID:KRH26679 | ProteinID:KRH26679.1 |
| PFAM:PF00850 | PRINTS:PR01270 | PANTHER:PTHR10625 | PANTHER:PTHR10625:SF121 | SUPFAM:SSF52768 | UniParc:UPI000233D757 |
| InterPro:Ureohydrolase_dom_sf | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr12:-:34921704..34925036
Molecular Weight (calculated)
41185.0 Da
IEP (calculated)
5.627
GRAVY (calculated)
-0.133
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MADAGAEGAS SSTVGQIDVF WHEGMLKHDT GNGVFDTGMD PGFLEVLEKH PENSDRVKNL VSILKRGPIS PYISWHLGTP AKIPELFSFH TPEYINELVE
101: VDKEGGKQLC GGTFLNPGSW DAALLAAGTT LSAMKHLLNG DGKVSYALVR PPGHHAQPSL ADGYCFLNNA GLAVQLALDS GCKKVAVIDI DVHYGNGTAE
201: GFYRSNKVLT ISLHMNHGSW GPSHPQSGSV DELGEGEGYG FNLNIPLPNG TGDKGYVHAF NELVVPSIQK FGPDMIVLVL GQDSNAFDPN GRQCLTMEGY
301: REIGRIVHLL AKRHSAGRLL IVQEGGYHVT YSAYCLHATL EGILNLPMPL LADPIAFYLD DETFSVQVIE AIKNYQKDKV C
101: VDKEGGKQLC GGTFLNPGSW DAALLAAGTT LSAMKHLLNG DGKVSYALVR PPGHHAQPSL ADGYCFLNNA GLAVQLALDS GCKKVAVIDI DVHYGNGTAE
201: GFYRSNKVLT ISLHMNHGSW GPSHPQSGSV DELGEGEGYG FNLNIPLPNG TGDKGYVHAF NELVVPSIQK FGPDMIVLVL GQDSNAFDPN GRQCLTMEGY
301: REIGRIVHLL AKRHSAGRLL IVQEGGYHVT YSAYCLHATL EGILNLPMPL LADPIAFYLD DETFSVQVIE AIKNYQKDKV C
001: MVTNRVDVFW HEGMLRHDAV EGVFDTGYDP GFLDVLEKHP ENADRVRNML SILRRGPIAP HVNWFTGLPA IVSELLMFHT SEYIEKLVEA DKSGERCEIA
101: AGTFMSPGSW EAALLAAGTT LSAMQHILDC HGKIAYALVR PPGHHSQPTQ ADGYCFLNNA ALAVKLALNS GSCSRVAVID IDVHYGNGTA EGFYTSDKVL
201: TVSLHMNHGS WGSSHPQKGS IDELGEDVGL GYNLNVPLPN GTGDRGYEYA MNELVVPAVR RFGPDMVVLV VGQDSSAFDP NGRQSLTMNG YRRIGQIMRG
301: VAEEHSHGRL LMVQEGGYHV TYAAYCLHAM LEGVLKIPEP HLSDPIAYYP EEEANAVAAV ESIKTYHTEF VPFLRGT
101: AGTFMSPGSW EAALLAAGTT LSAMQHILDC HGKIAYALVR PPGHHSQPTQ ADGYCFLNNA ALAVKLALNS GSCSRVAVID IDVHYGNGTA EGFYTSDKVL
201: TVSLHMNHGS WGSSHPQKGS IDELGEDVGL GYNLNVPLPN GTGDRGYEYA MNELVVPAVR RFGPDMVVLV VGQDSSAFDP NGRQSLTMNG YRRIGQIMRG
301: VAEEHSHGRL LMVQEGGYHV TYAAYCLHAM LEGVLKIPEP HLSDPIAYYP EEEANAVAAV ESIKTYHTEF VPFLRGT
Arabidopsis Description
HDA8Histone deacetylase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q94EJ2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.