Factsheet for GSMUA_Achr7P09050_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr7P09050_001
GSMUA_Achr7P09060_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G08460.1	GSMUA_Achr7P09050_001	AT1G08460.1	21798944
AT1G08460.1	GSMUA_Achr7P09060_001	AT1G08460.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	plastid	56.94	36.45
GSMUA_AchrUn_...	Banana	cytosol	17.79	12.69
GSMUA_AchrUn_...	Banana	mitochondrion	15.3	11.88
GSMUA_Achr1P14440_001	Banana	cytosol	17.44	11.78
GSMUA_Achr8P04190_001	Banana	cytosol, nucleus, plasma membrane	17.79	11.6
GSMUA_Achr2P06520_001	Banana	cytosol	14.95	11.54
VIT_06s0080g00210.t01	Wine grape	nucleus	13.88	11.21
PGSC0003DMT400015085	Potato	cytoskeleton, cytosol, nucleus	14.95	11.08
Solyc06g074080.2.1	Tomato	cytosol	14.95	10.91
AT1G08460.1	Thale cress	cytosol	14.59	10.88
KRH26679	Soybean	cytosol	14.59	10.76
GSMUA_Achr6P19520_001	Banana	cytosol	14.23	10.36
CDY22682	Canola	cytosol	14.23	10.36
CDY06315	Canola	cytosol	14.23	10.36
Bra031628.1-P	Field mustard	cytosol	14.23	10.36
GSMUA_Achr6P17260_001	Banana	plastid	17.08	10.0
GSMUA_Achr5P06320_001	Banana	nucleus	15.3	9.27
GSMUA_Achr2P19590_001	Banana	nucleus	14.95	9.23
GSMUA_AchrUn_...	Banana	cytosol	11.03	7.0
GSMUA_Achr4P03250_001	Banana	cytosol	14.23	6.02
GSMUA_Achr8P20260_001	Banana	nucleus	12.46	5.53
GSMUA_Achr7P09060_001	Banana	mitochondrion	0.36	1.92
Os05t0440100-02	Rice	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr7P09050_001	EnsemblPlants:GSMUA_Achr7T09050_001	EnsemblPlantsGene:GSMUA_Achr7G09050_001	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	InterPro:Ureohydrolase_dom_sf	PANTHER:PTHR43497	PANTHER:PTHR43497:SF2
SUPFAM:SSF52768	UniParc:UPI0002961517	UniProt:M0TFZ3	MapMan:35.1	:	:

Description

Putative Histone deacetylase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr7G09050_001]

Coordinates

chr7:+:7409060..7416375

Molecular Weight (calculated)

31702.8 Da

IEP (calculated)

7.801

GRAVY (calculated)

0.163

Length

281 amino acids

Sequence
(BLAST)

001: MAASSFSAAE SLRRDRILPG KLYFDVPPSK VLVIYSSSYD IAFLGIEKMV PTFLGSKGCH QIMGSTMLNY YFDWYPLQHR IFLELMLIMK VPQVALLSND
101: LVQNRVLYPY RKQVRGSILA AKIAIERGWA INVGGGFHHC SAEKGGGFCV YAIFHYAFSL ILSMINHLID LFGFICLDFQ LFCLNICQVM NNMNHKLSPS
201: WSWIIHNNLR LGNSEAKRYI DLKVELVSGT KTKEYLDKLD EALEVARNDF DPELVVYNAG TDVLGDPLGR LKVCPDGVSV N

Best Arabidopsis Sequence Match ( AT5G26040.2 )
(BLAST)

001: MTHTRVISTW TELTRDLAIY LLFTFFAIKV FKFLFSCNRT SEISSFSMAT HPEALRRERI LNSKLYFDVP LSKVSIIYSS SYDISFMGIE KLHPFDSSKW
101: GRVCKFLVSD GFLEEKAIVE PLEASKIDLL VVHSENYLNS LKSSATVARI TEVAPVAFFP NFLVQQKVLY PFRKQVGGTI LAAKLATERG WAINIGGGFH
201: HCTAERGGGF CAFADISLCI HFAFLRLRIS RVMIIDLDAH QGNGHETDLG DDNRVYILDM YNPEIYPFDY RARRFIDQKV EVMSGTTTDE YLRKLDEALE
301: VASRNFQPEL VIYNAGTDIL DGDPLGLLKI SPDGITSRDE KVFRFAREKN IPLVMLTSGG YMKSSARVIA DSIENLSRQG LIQTRPE

Arabidopsis Description

HDA2Histone deacetylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q944K3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.