Factsheet for GSMUA_Achr1P14440_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P12560_001
GSMUA_Achr5P27930_001	nucleus
GSMUA_Achr8P01750_001	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38130.1	GSMUA_Achr3P12560_001	AT2G45640.1	16429262
AT4G38130.1	GSMUA_Achr5P27930_001	AT4G32010.1	23362207
AT4G38130.1	GSMUA_Achr8P01750_001	AT4G32010.1	23362207
AT4G38130.1	GSMUA_Achr5P27930_001	AT4G32010.1	23362207
AT4G38130.1	GSMUA_Achr8P01750_001	AT4G32010.1	23362207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	63.7	67.26
Zm00001d016381_P001	Maize	nucleus	62.02	63.24
GSMUA_Achr8P04190_001	Banana	cytosol, nucleus, plasma membrane	65.38	63.11
GSMUA_Achr2P19590_001	Banana	nucleus	59.86	54.73
GSMUA_Achr5P06320_001	Banana	nucleus	60.58	54.31
GSMUA_AchrUn_...	Banana	mitochondrion	47.12	54.14
KRH60609	Soybean	nucleus	64.42	53.92
KRH51318	Soybean	nucleus	64.18	53.72
Solyc09g091440.2.1	Tomato	nucleus	64.18	53.61
GSMUA_Achr2P06520_001	Banana	cytosol	46.39	53.02
VIT_03s0038g04240.t01	Wine grape	nucleus	63.7	52.79
VIT_14s0006g01820.t01	Wine grape	nucleus	63.46	52.59
KRH77972	Soybean	nucleus	62.5	52.31
KRH27562	Soybean	nucleus	62.26	52.11
EES04741	Sorghum	nucleus	64.66	52.03
Bra040131.1-P	Field mustard	nucleus	62.74	51.99
AT4G38130.1	Thale cress	nucleus	62.5	51.9
CDY21119	Canola	nucleus	62.5	51.79
CDY30008	Canola	nucleus	62.5	51.79
Zm00001d053595_P004	Maize	nucleus	64.18	51.64
TraesCS6A01G184100.2	Wheat	nucleus	64.18	51.45
Os02t0214900-01	Rice	cytoskeleton, cytosol, nucleus	62.98	51.37
TraesCS6B01G212600.3	Wheat	nucleus	64.18	51.35
Os06t0583400-01	Rice	nucleus	63.7	51.16
Os02t0215200-02	Rice	cytoskeleton, cytosol, nucleus	62.5	51.08
KXG20269	Sorghum	nucleus	63.46	50.97
HORVU6Hr1G038710.1	Barley	cytosol	63.22	50.77
PGSC0003DMT400076252	Potato	nucleus	64.18	49.81
Zm00001d046388_P001	Maize	nucleus	63.22	49.53
HORVU7Hr1G085870.2	Barley	nucleus	61.3	49.13
TraesCS7B01G261800.1	Wheat	nucleus	61.06	48.94
TraesCS7D01G356800.1	Wheat	nucleus	61.06	48.94
TraesCS7A01G365600.3	Wheat	nucleus	61.06	48.57
TraesCS6D01G171000.1	Wheat	golgi	64.18	46.52
Zm00001d014076_P001	Maize	cytosol, mitochondrion, nucleus	10.1	43.3
GSMUA_Achr6P17260_001	Banana	plastid	49.52	42.92
Zm00001d018346_P001	Maize	mitochondrion	16.35	30.77
Zm00001d039202_P001	Maize	nucleus	12.02	30.12
GSMUA_Achr7P09060_001	Banana	mitochondrion	2.88	23.08
GSMUA_Achr6P19520_001	Banana	cytosol	19.71	21.24
GSMUA_Achr10P...	Banana	plastid	20.19	19.13
GSMUA_Achr7P09050_001	Banana	cytosol	11.78	17.44
GSMUA_AchrUn_...	Banana	cytosol	17.07	16.03
GSMUA_Achr4P03250_001	Banana	cytosol	22.84	14.31
GSMUA_Achr8P20260_001	Banana	nucleus	20.19	13.27

Protein Annotations

MapMan:12.3.2.1.1	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325
GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538
GO:GO:0032041	GO:GO:0046872	GO:GO:0070932	EnsemblPlantsGene:GSMUA_Achr1G14440_001	EnsemblPlants:GSMUA_Achr1P14440_001	EnsemblPlants:GSMUA_Achr1T14440_001
InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	UniProt:M0RZV2
PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270	PANTHER:PTHR10625	PANTHER:PTHR10625:SF127	SUPFAM:SSF52768
UniParc:UPI00029548F7	InterPro:Ureohydrolase_dom_sf	:	:	:	:

Description

Histone deacetylase 19 [Source:GMGC_GENE;Acc:GSMUA_Achr1G14440_001]

Coordinates

chr1:-:10979285..10981012

Molecular Weight (calculated)

46438.7 Da

IEP (calculated)

7.786

GRAVY (calculated)

-0.131

Length

416 amino acids

Sequence
(BLAST)

001: MDVAGTSGGG SSLPSVGTDA TKRKVCYFYH PTMGNFYYGN GHPMKPHRVR MTHALLEKYG LLRHMRNDPA TLRRFNIDGV ECPIFHGLYK FCQLYAGASI
101: SAARQINLDH YDIVINWSGG LHHAKKSIAS GFCYVNDVVL AILSLLETRD RVLYVDIDIH HGDGVEEAFY TTDRVMTVSF HKFGGYFPGT GHIDDIGCDG
201: GKYYAVNVPL DDGIDDESYL YVFKPVVAKA MEVFRPNAIV LQCGADSLSG DRLGCFNLSV RGHGECVKYM RSFNVPLMLL GGGGYTLHNV ARCWCYETGV
301: ALGIEVNNKI PDHQYSEYFA PLYRIHLPTT NMTNKNSRKS LDDTIAKVLA NLSKLQAAPS VQFKERSSPM DLAEVLTTMP SFVTSLSRNV DYFMLKSYTL
401: QYLIAFDFRH TITGTK

Best Arabidopsis Sequence Match ( AT5G35600.1 )
(BLAST)

001: MASLADGGKR RVSYFYEPMI GDYYYGVNQP TKPQRIRVTH NLILSYNLHR HMEINHPDLA DASDFEKFHS LEYINFLKSV TPETVTDPHP SVSENLKRFN
101: VDVDWDGPVF HNLFDYCRAY AGGSISAAAK LNRQEADIAI NWAGGMHHVK KDKASGFGYV NDVVLAILEL LKSFKRVLYI EIGFPHGDEV EEAFKDTDRV
201: MTVSFHKVGD TGDISDYGEG KGQYYSLNAP LKDGLDDFSL RGLFIPVIHR AMEIYEPEVI VLQCGADSLA GDPFGTFNLS IKGHGDCLQY VRSFNVPLMI
301: LGGGGYTLPN VARCWCYETA IAVGEQLDND LPGNDYMKYF RPDYKLHILP TNRQNLNTRL DIITMRETLL AQLSLVMHAP SVPFQDTPSS SQATEAAEVD
401: MEKRNDPRI

Arabidopsis Description

HDA7Histone deacetylase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.