Factsheet for GSMUA_Achr6P17260_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 2
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0021g00610.t01	Wine grape	cytosol	80.0	89.3
VIT_06s0061g01510.t01	Wine grape	cytosol, mitochondrion, nucleus	80.0	89.3
EES10729	Sorghum	cytosol	78.96	88.14
TraesCS2D01G291000.1	Wheat	cytosol	78.12	87.21
KRH30495	Soybean	cytosol	77.92	87.18
TraesCS2B01G309700.1	Wheat	cytosol	77.92	86.98
TraesCS2A01G293200.1	Wheat	cytosol	77.92	86.98
KRH25183	Soybean	cytosol	77.71	86.95
PGSC0003DMT400068240	Potato	cytosol	70.0	84.63
Solyc11g067020.1.1	Tomato	cytosol	75.62	84.42
AT3G44680.1	Thale cress	cytosol	74.38	83.8
Zm00001d003813_P001	Maize	cytosol	77.29	83.0
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	68.54	82.04
Bra019424.1-P	Field mustard	cytosol	72.5	81.69
CDX99186	Canola	cytosol	72.5	81.69
HORVU2Hr1G072600.1	Barley	endoplasmic reticulum	41.67	80.65
AT3G44490.1	Thale cress	cytosol	26.46	80.38
AT3G44660.1	Thale cress	cytoskeleton, cytosol, nucleus	23.33	78.87
HORVU2Hr1G072570.5	Barley	plastid	40.83	69.75
Os04t0409600-01	Rice	cytosol	25.83	65.96
GSMUA_Achr2P06520_001	Banana	cytosol	43.75	57.69
GSMUA_AchrUn_...	Banana	mitochondrion	40.83	54.14
GSMUA_AchrUn_...	Banana	cytosol	44.38	54.06
GSMUA_Achr8P04190_001	Banana	cytosol, nucleus, plasma membrane	44.79	49.88
GSMUA_Achr1P14440_001	Banana	cytosol	42.92	49.52
GSMUA_Achr5P06320_001	Banana	nucleus	46.04	47.63
GSMUA_Achr2P19590_001	Banana	nucleus	44.79	47.25
GSMUA_Achr6P19520_001	Banana	cytosol	17.5	21.76
GSMUA_Achr7P09060_001	Banana	mitochondrion	2.08	19.23
GSMUA_Achr10P...	Banana	plastid	17.29	18.91
GSMUA_Achr7P09050_001	Banana	cytosol	10.0	17.08
GSMUA_AchrUn_...	Banana	cytosol	15.42	16.7
GSMUA_Achr4P03250_001	Banana	cytosol	20.42	14.76
GSMUA_Achr8P20260_001	Banana	nucleus	18.96	14.38

Protein Annotations

MapMan:12.3.2.1.1	MapMan:12.3.2.1.4.1	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787
GO:GO:0019538	GO:GO:0032041	GO:GO:0046872	GO:GO:0070932	EnsemblPlantsGene:GSMUA_Achr6G17260_001	EnsemblPlants:GSMUA_Achr6P17260_001
EnsemblPlants:GSMUA_Achr6T17260_001	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138
UniProt:M0T7S4	PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625
PANTHER:PTHR10625:SF171	SUPFAM:SSF52768	UniParc:UPI000296A646	InterPro:Ureohydrolase_dom_sf	:	:

Description

Histone deacetylase 9 [Source:GMGC_GENE;Acc:GSMUA_Achr6G17260_001]

Coordinates

chr6:+:11609479..11617659

Molecular Weight (calculated)

54735.6 Da

IEP (calculated)

5.147

GRAVY (calculated)

-0.411

Length

480 amino acids

Sequence
(BLAST)

001: MDLISYRTVK SSTVFEGSSS RLRARKISFR RRASSDEPSS EMPPKERIAY FYDGDVGNVY FGPNHPMKPH RLCMTHHLVL SYGLYKKMEI YRPHKAYPVE
101: LAQFHSADYV EFLHRISPNT QHLFADELAR YNLGEDCPVF ENLFEFCQMY AGGTIDAARR LNHQLCDIAI NWSGGLHHAK KSAASGFCYI NDLVLGILEL
201: LKYHARVLYI DIDVHHGDGV EEAFYFTDRQ STYFTFQVMT VSFHKFGDMF FPGTGDVKDI GEREGKYYAI NVPLKDGIDD ASFTRLFKTI IAKVVETYLP
301: GVIVLQCGAD SLAGDRLGCF NLSIEGHSEC VKFVKKFNLP LLVTGGGGYT KENVARCWTV ETGVLLDADL PNEIPENEYI KYFAPDYTLK IPNGNMENLN
401: SKSYLSTIKV QVLESLRCIQ HAPGVQMQEV PPDFYIPEFD EDEQNPDERV DQHTTDKQIQ RDDEYFEGDN DNDHNMEDGP

Best Arabidopsis Sequence Match ( AT3G44680.1 )
(BLAST)

001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS

Arabidopsis Description

HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.