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Banana
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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • cytosol 1
  • mitochondrion 5
  • extracellular 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, extracellular, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:plastid
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:extracellular
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
GSMUA_Achr7P09050_001
GSMUA_Achr7P09060_001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G08460.1 GSMUA_Achr7P09050_001 AT1G08460.1 21798944
AT1G08460.1 GSMUA_Achr7P09060_001 AT1G08460.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr10P... Banana plastid 65.38 7.74
GSMUA_AchrUn_... Banana cytosol 26.92 3.55
GSMUA_Achr8P04190_001 Banana cytosol, nucleus, plasma membrane 26.92 3.25
GSMUA_Achr2P19590_001 Banana nucleus 26.92 3.08
GSMUA_AchrUn_... Banana mitochondrion 21.15 3.04
GSMUA_Achr2P06520_001 Banana cytosol 21.15 3.02
GSMUA_Achr5P06320_001 Banana nucleus 26.92 3.02
GSMUA_Achr1P14440_001 Banana cytosol 23.08 2.88
GSMUA_Achr6P17260_001 Banana plastid 19.23 2.08
GSMUA_Achr6P19520_001 Banana cytosol 11.54 1.55
GSMUA_Achr4P03250_001 Banana cytosol 19.23 1.51
KRH26679 Soybean cytosol 9.62 1.31
GSMUA_Achr8P20260_001 Banana nucleus 13.46 1.11
AT1G08460.1 Thale cress cytosol 7.69 1.06
PGSC0003DMT400015085 Potato cytoskeleton, cytosol, nucleus 7.69 1.06
Solyc06g074080.2.1 Tomato cytosol 7.69 1.04
Bra031628.1-P Field mustard cytosol 7.69 1.04
CDY22682 Canola cytosol 7.69 1.04
CDY06315 Canola cytosol 7.69 1.04
VIT_06s0080g00210.t01 Wine grape nucleus 5.77 0.86
Os05t0440100-02 Rice cytosol 3.85 0.73
GSMUA_AchrUn_... Banana cytosol 5.77 0.68
GSMUA_Achr7P09050_001 Banana cytosol 1.92 0.36
Protein Annotations
EnsemblPlants:GSMUA_Achr7P09060_001EnsemblPlants:GSMUA_Achr7T09060_001EnsemblPlantsGene:GSMUA_Achr7G09060_001PANTHER:PTHR43497PANTHER:PTHR43497:SF2UniParc:UPI000296CE4F
UniProt:M0TFZ4MapMan:35.2::::
Description
histone deacetylase, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G09060_001]
Coordinates
chr7:+:7416378..7416722
Molecular Weight (calculated)
5927.4 Da
IEP (calculated)
11.378
GRAVY (calculated)
0.231
Length
52 amino acids
Sequence
(BLAST)
1: MRVFRFARER NIPLVMLTSG GFMKSSAKAT ADSIINLFNR NLIDLDRLLP LC
Best Arabidopsis Sequence Match ( AT5G26040.1 )
(BLAST)
001: MTHTRVISTW TELTRDLAIY LLFTFFAIKV FKFLFSCNRT SEISSFSMAT HPEALRRERI LNSKLYFDVP LSKVSIIYSS SYDISFMGIE KLHPFDSSKW
101: GRVCKFLVSD GFLEEKAIVE PLEASKIDLL VVHSENYLNS LKSSATVARI TEVAPVAFFP NFLVQQKVLY PFRKQVGGTI LAAKLATERG WAINIGGGFH
201: HCTAERGDLD AHQGNGHETD LGDDNRVYIL DMYNPEIYPF DYRARRFIDQ KVEVMSGTTT DEYLRKLDEA LEVASRNFQP ELVIYNAGTD ILDGDPLGLL
301: KISPDGITSR DEKVFRFARE KNIPLVMLTS GGYMKSSARV IADSIENLSR QGLIQTRPE
Arabidopsis Description
HDA2Histone deacetylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q944K3]
SUBAcon: [endoplasmic reticulum,golgi,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.