Factsheet for Solyc06g074080.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g074080.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G08460.1	Solyc06g074080.2.1	AT1G08460.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015085	Potato	cytoskeleton, cytosol, nucleus	91.69	93.14
VIT_06s0080g00210.t01	Wine grape	nucleus	72.99	80.75
KRH26679	Soybean	cytosol	73.77	74.54
EES19606	Sorghum	cytosol	71.69	70.77
AT1G08460.1	Thale cress	cytosol	68.83	70.29
HORVU1Hr1G074110.1	Barley	cytosol	70.91	70.18
Bra031628.1-P	Field mustard	cytosol	69.87	69.69
CDY22682	Canola	cytosol	69.61	69.43
TraesCS1A01G275300.1	Wheat	cytosol, nucleus, plastid	70.13	69.05
TraesCS1B01G284500.1	Wheat	cytosol, nucleus, plastid	70.39	68.96
CDY06315	Canola	cytosol	68.83	68.65
TraesCS1D01G274900.1	Wheat	cytosol, nucleus, plastid	64.42	67.76
Zm00001d010162_P002	Maize	cytosol	55.32	37.83
Zm00001d010152_P002	Maize	cytosol	55.32	37.83
Solyc01g009110.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus, plastid	18.96	27.55
Solyc03g119730.2.1	Tomato	nucleus	29.09	18.36
Solyc11g067020.1.1	Tomato	cytosol	20.26	18.14
Solyc03g112410.1.1	Tomato	cytosol	20.26	17.37
Solyc06g071680.2.1	Tomato	cytosol	20.26	16.56
Solyc09g091440.2.1	Tomato	nucleus	21.04	16.27
Solyc03g115150.2.1	Tomato	cytosol	27.27	16.23
Solyc08g065350.2.1	Tomato	cytosol	14.55	16.14
GSMUA_Achr7P09050_001	Banana	cytosol	10.91	14.95
GSMUA_Achr7P09060_001	Banana	mitochondrion	1.04	7.69
Os05t0440100-02	Rice	cytosol	2.6	3.65

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351
GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041
GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	UniProt:K4C9C6
PFAM:PF00850	PRINTS:PR01270	PANTHER:PTHR10625	PANTHER:PTHR10625:SF121	SUPFAM:SSF52768	EnsemblPlantsGene:Solyc06g074080.2
EnsemblPlants:Solyc06g074080.2.1	UniParc:UPI00027663AF	InterPro:Ureohydrolase_dom_sf	SEG:seg	:	:

Description

Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:K4C9C6]

Coordinates

chr6:-:45790241..45793330

Molecular Weight (calculated)

42051.9 Da

IEP (calculated)

5.868

GRAVY (calculated)

-0.240

Length

385 amino acids

Sequence
(BLAST)

001: MASSASQSLP SKNNLIHVFW DEGMLKHDTG RGVFDTGMDP GFLDVLEKHP ENSDRVKNML SILKRGPISP FISWHHGRPA HVSELLSFHT QEYVNELIEA
101: DRNGGKELCG GTFLNPGSWH ATLLAAGTTL SAMKLIIDGH GNVAYALVRP PGHHAQPTQA DGYCFLNNAG LAVQLALDGG CRKVVVLDID VHYGNGTAEG
201: FYHFDKVLTI SLHMNHGSWG PSHSQGGTIE ELGEGEGFGY NLNIPLPNGT GDKGYGYAMQ HLVVPAIEKF EPDMMVLVVG QDSSAFDPNG RQCLTMEGYR
301: EIGQTIRGMA NKYSNGRLLI VQEGGYHVTY SAYCLHATLE GVLNVSDPLL SDPIAYYPED ESFPAKVIDA IKKYQREVVP FLRDA

Best Arabidopsis Sequence Match ( AT1G08460.1 )
(BLAST)

001: MVTNRVDVFW HEGMLRHDAV EGVFDTGYDP GFLDVLEKHP ENADRVRNML SILRRGPIAP HVNWFTGLPA IVSELLMFHT SEYIEKLVEA DKSGERCEIA
101: AGTFMSPGSW EAALLAAGTT LSAMQHILDC HGKIAYALVR PPGHHSQPTQ ADGYCFLNNA ALAVKLALNS GSCSRVAVID IDVHYGNGTA EGFYTSDKVL
201: TVSLHMNHGS WGSSHPQKGS IDELGEDVGL GYNLNVPLPN GTGDRGYEYA MNELVVPAVR RFGPDMVVLV VGQDSSAFDP NGRQSLTMNG YRRIGQIMRG
301: VAEEHSHGRL LMVQEGGYHV TYAAYCLHAM LEGVLKIPEP HLSDPIAYYP EEEANAVAAV ESIKTYHTEF VPFLRGT

Arabidopsis Description

HDA8Histone deacetylase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q94EJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.