CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY06315
CDY22682

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G08460.1	CDY06315	AT1G08460.1	21798944
AT1G08460.1	CDY22682	AT1G08460.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031628.1-P	Field mustard	cytosol	96.89	96.89
CDY06315	Canola	cytosol	96.11	96.11
AT1G08460.1	Thale cress	cytosol	86.79	88.86
VIT_06s0080g00210.t01	Wine grape	nucleus	63.99	70.98
Solyc06g074080.2.1	Tomato	cytosol	69.43	69.61
PGSC0003DMT400015085	Potato	cytoskeleton, cytosol, nucleus	67.88	69.13
HORVU1Hr1G074110.1	Barley	cytosol	68.13	67.61
KRH26679	Soybean	cytosol	65.8	66.67
EES19606	Sorghum	cytosol	67.36	66.67
TraesCS1A01G275300.1	Wheat	cytosol, nucleus, plastid	67.1	66.24
TraesCS1B01G284500.1	Wheat	cytosol, nucleus, plastid	66.84	65.65
TraesCS1D01G274900.1	Wheat	cytosol, nucleus, plastid	60.88	64.21
Zm00001d010162_P002	Maize	cytosol	53.37	36.59
Zm00001d010152_P002	Maize	cytosol	53.37	36.59
CDX82341	Canola	nucleus	28.5	24.77
CDY24487	Canola	cytosol, nucleus, peroxisome	30.31	21.51
CDX92243	Canola	nucleus	30.05	20.35
CDX75356	Canola	plastid	22.28	20.24
CDX68980	Canola	mitochondrion, plastid	22.28	20.24
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	19.69	18.95
CDX99186	Canola	cytosol	20.73	18.78
CDY48127	Canola	nucleus	22.28	18.3
CDY16736	Canola	nucleus	22.28	18.3
CDY42846	Canola	nucleus	24.35	18.18
CDY39567	Canola	cytosol	17.88	17.0
CDY30008	Canola	nucleus	22.02	16.93
CDY21119	Canola	nucleus	22.02	16.93
CDY02173	Canola	nucleus	28.5	16.9
CDY21800	Canola	cytosol	17.1	16.46
CDY23088	Canola	nucleus	27.46	16.38
CDY16823	Canola	peroxisome	27.46	16.31
CDY48157	Canola	cytosol	16.84	16.29
CDX84385	Canola	cytosol	21.24	16.24
CDX87200	Canola	peroxisome	27.46	16.18
CDY48160	Canola	cytosol	16.84	15.89
CDY39570	Canola	cytosol	16.84	15.89
CDY47012	Canola	cytosol	17.36	15.65
CDY52901	Canola	nucleus	17.62	14.59
CDY41500	Canola	cytosol	21.24	14.39
GSMUA_Achr7P09050_001	Banana	cytosol	10.36	14.23
CDX88212	Canola	cytosol, golgi, nucleus, plastid	13.73	13.35
CDY53952	Canola	plastid	8.29	13.17
CDX80555	Canola	cytosol, golgi, nucleus, plastid	11.4	11.76
GSMUA_Achr7P09060_001	Banana	mitochondrion	1.04	7.69
Os05t0440100-02	Rice	cytosol	1.81	2.55

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.40.800.20	GO:A0A078GCA5	UniProt:A0A078GCA5	EnsemblPlants:CDY22682	ProteinID:CDY22682
ProteinID:CDY22682.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0070932
EnsemblPlantsGene:GSBRNA2T00019353001	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	PFAM:PF00850
PRINTS:PR01270	PANTHER:PTHR10625	PANTHER:PTHR10625:SF121	SUPFAM:SSF52768	UniParc:UPI0004EE8881	InterPro:Ureohydrolase_dom_sf
SEG:seg	:	:	:	:	:

Description

BnaC08g43160DHistone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A078GCA5]

Coordinates

chrLK032134:-:448681..450932

Molecular Weight (calculated)

42056.8 Da

IEP (calculated)

5.894

GRAVY (calculated)

-0.206

Length

386 amino acids

Sequence
(BLAST)

001: MLSSDQTLKP QSDAVDVFWH EGMLQHDAVE GVFDTGTNPG FLDVLEKHPE NADRVRNMVS ILQRGPIAPH VNWLPGRLAI VSELLTFHTS DYINKLIEAD
101: KSGERREISA GTFMSPGSWE AALLAAGTTL SAMQHILDSH GKIAYALVRP PGHHSQPTQA DGYCFLNNAA LAVKLALDSG QCSRVAVVDI DVHYGNGTAE
201: GFYRSDKVLT VSLHMNHGSW GSSHPQRGSV DEIGEGVGLG YNLNVPLPNG TGDKGYEYAV NELVVPAVRR FGPDMVVLVV GQDSSAFDPN GRQSLTMNGY
301: RRIGQIIRAM AEEHSNGRLL MVQEGGYHVT YAAYCLHAML EGVLKIPEPH LSDPVAYYPE DEAVAVEAVK SIKRYHSECV PFLRGT

Best Arabidopsis Sequence Match ( AT1G08460.1 )
(BLAST)

001: MVTNRVDVFW HEGMLRHDAV EGVFDTGYDP GFLDVLEKHP ENADRVRNML SILRRGPIAP HVNWFTGLPA IVSELLMFHT SEYIEKLVEA DKSGERCEIA
101: AGTFMSPGSW EAALLAAGTT LSAMQHILDC HGKIAYALVR PPGHHSQPTQ ADGYCFLNNA ALAVKLALNS GSCSRVAVID IDVHYGNGTA EGFYTSDKVL
201: TVSLHMNHGS WGSSHPQKGS IDELGEDVGL GYNLNVPLPN GTGDRGYEYA MNELVVPAVR RFGPDMVVLV VGQDSSAFDP NGRQSLTMNG YRRIGQIMRG
301: VAEEHSHGRL LMVQEGGYHV TYAAYCLHAM LEGVLKIPEP HLSDPIAYYP EEEANAVAAV ESIKTYHTEF VPFLRGT

Arabidopsis Description

HDA8Histone deacetylase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q94EJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.