Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019516.1-P | Field mustard | cytosol | 98.0 | 98.0 |
| CDY48157 | Canola | cytosol | 91.52 | 91.98 |
| CDY39567 | Canola | cytosol | 89.78 | 88.67 |
| CDY48160 | Canola | cytosol | 76.56 | 75.06 |
| CDY39570 | Canola | cytosol | 76.56 | 75.06 |
| AT5G35600.1 | Thale cress | cytosol | 64.84 | 63.57 |
| CDY16736 | Canola | nucleus | 59.6 | 50.85 |
| CDY48127 | Canola | nucleus | 59.35 | 50.64 |
| CDX84385 | Canola | cytosol | 59.85 | 47.52 |
| CDY08684 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 43.39 | 43.39 |
| CDY30008 | Canola | nucleus | 53.12 | 42.43 |
| CDY21119 | Canola | nucleus | 53.12 | 42.43 |
| CDY41500 | Canola | cytosol | 59.85 | 42.11 |
| CDX99186 | Canola | cytosol | 44.64 | 42.02 |
| CDY53952 | Canola | plastid | 22.44 | 37.04 |
| CDX88212 | Canola | cytosol, golgi, nucleus, plastid | 18.2 | 18.39 |
| CDX80555 | Canola | cytosol, golgi, nucleus, plastid | 16.21 | 17.38 |
| CDY06315 | Canola | cytosol | 16.46 | 17.1 |
| CDY22682 | Canola | cytosol | 16.46 | 17.1 |
| CDX68980 | Canola | mitochondrion, plastid | 16.21 | 15.29 |
| CDX75356 | Canola | plastid | 15.96 | 15.06 |
| CDX82341 | Canola | nucleus | 15.96 | 14.41 |
| CDY42846 | Canola | nucleus | 16.96 | 13.15 |
| CDY24487 | Canola | cytosol, nucleus, peroxisome | 16.96 | 12.5 |
| CDY02173 | Canola | nucleus | 20.2 | 12.44 |
| CDY23088 | Canola | nucleus | 19.95 | 12.36 |
| CDX92243 | Canola | nucleus | 16.96 | 11.93 |
| CDY16823 | Canola | peroxisome | 19.2 | 11.85 |
| CDX87200 | Canola | peroxisome | 18.95 | 11.6 |
| CDY47012 | Canola | cytosol | 10.97 | 10.28 |
| CDY52901 | Canola | nucleus | 9.98 | 8.58 |
Protein Annotations
| MapMan:12.3.2.1.1 | Gene3D:3.40.800.20 | GO:A0A078G5R8 | UniProt:A0A078G5R8 | EnsemblPlants:CDY21800 | ProteinID:CDY21800 |
| ProteinID:CDY21800.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006325 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016569 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0032041 |
| GO:GO:0046872 | GO:GO:0070932 | EnsemblPlantsGene:GSBRNA2T00016342001 | InterPro:His_deacetylse | InterPro:His_deacetylse_1 | InterPro:His_deacetylse_dom |
| InterPro:His_deacetylse_dom_sf | InterPro:IPR037138 | PFAM:PF00850 | PIRSF:PIRSF037913 | PRINTS:PR01270 | PRINTS:PR01271 |
| PANTHER:PTHR10625 | PANTHER:PTHR10625:SF144 | SUPFAM:SSF52768 | UniParc:UPI0004EEB33E | InterPro:Ureohydrolase_dom_sf | SEG:seg |
Description
BnaA06g20690DHistone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A078G5R8]
Coordinates
chrLK032124:-:371437..373296
Molecular Weight (calculated)
44826.3 Da
IEP (calculated)
6.321
GRAVY (calculated)
-0.274
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLASGPDG RKRRVSYFYE PYISDGMESQ QIRTTHKLIR SYYLLRYMDI IRPRAAHHSD FTKFHSPEYI SFLRSVTPES ARLKTATDPS FKRFNLDAWD
101: SPVFSGLFPY CRLYAGGSIS AAEKLNRHEA DIAINWSGGM HRAKIDKACG FGYVNDVVLG ILELLNVFKR VLYIDIGYYH GEAVQEAFHK TDRVMTVSFH
201: NSEVDQKRGD ITDYGVGKGE YYSLNAPLKN GLDDASFATL FVPIIQKAME VYQPEAIVLL CGPDSLSGDA LGKFNLSVKG HGACLGYIRS FNVPLLLLGG
301: QGHTLGNVAR CWCYETGVAV GKELNDDCPM IADDDCFAPS YKLHFEPNPM ENLNTDGDIA KIKKTLLKQL SQVIHAPSVQ FQDTPPISQV TEAEEEDMET
401: R
101: SPVFSGLFPY CRLYAGGSIS AAEKLNRHEA DIAINWSGGM HRAKIDKACG FGYVNDVVLG ILELLNVFKR VLYIDIGYYH GEAVQEAFHK TDRVMTVSFH
201: NSEVDQKRGD ITDYGVGKGE YYSLNAPLKN GLDDASFATL FVPIIQKAME VYQPEAIVLL CGPDSLSGDA LGKFNLSVKG HGACLGYIRS FNVPLLLLGG
301: QGHTLGNVAR CWCYETGVAV GKELNDDCPM IADDDCFAPS YKLHFEPNPM ENLNTDGDIA KIKKTLLKQL SQVIHAPSVQ FQDTPPISQV TEAEEEDMET
401: R
001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS
Arabidopsis Description
HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.