CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022329.1-P	Field mustard	nucleus	99.12	99.12
CDY24487	Canola	cytosol, nucleus, peroxisome	92.11	96.51
AT3G18520.2	Thale cress	cytosol	80.0	80.85
CDX82341	Canola	nucleus	62.46	80.18
KRH56687	Soybean	nucleus	50.53	69.06
KRH03799	Soybean	nucleus	58.95	61.88
CDY52901	Canola	nucleus	49.82	60.94
PGSC0003DMT400014582	Potato	nucleus	59.65	55.74
Solyc03g119730.2.1	Tomato	nucleus	59.47	55.57
VIT_17s0000g04120.t01	Wine grape	nucleus	61.75	50.5
GSMUA_Achr8P20260_001	Banana	nucleus	55.09	49.61
TraesCS5D01G076100.1	Wheat	nucleus	52.81	49.18
TraesCS5A01G065300.1	Wheat	nucleus	52.81	49.02
TraesCS5B01G072100.1	Wheat	nucleus	52.46	48.7
HORVU5Hr1G017550.9	Barley	nucleus	51.93	48.21
Os07t0164100-01	Rice	nucleus	51.75	47.35
Zm00001d018864_P002	Maize	nucleus	50.53	46.53
OQU88485	Sorghum	nucleus	50.7	45.95
CDY22682	Canola	cytosol	20.35	30.05
CDY06315	Canola	cytosol	20.35	30.05
CDX75356	Canola	plastid	20.35	27.29
CDX68980	Canola	mitochondrion, plastid	20.18	27.06
CDY42846	Canola	nucleus	23.51	25.92
CDY23088	Canola	nucleus	29.3	25.81
CDY02173	Canola	nucleus	29.47	25.81
CDY16823	Canola	peroxisome	28.07	24.62
CDX87200	Canola	peroxisome	28.07	24.43
CDY47012	Canola	cytosol	17.72	23.6
CDX99186	Canola	cytosol	14.39	19.25
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	13.51	19.2
CDY48127	Canola	nucleus	15.26	18.51
CDY16736	Canola	nucleus	15.26	18.51
CDY30008	Canola	nucleus	15.96	18.13
CDY21119	Canola	nucleus	15.96	18.13
CDX84385	Canola	cytosol	15.44	17.43
CDY48157	Canola	cytosol	12.11	17.29
CDY39567	Canola	cytosol	12.11	17.0
CDY21800	Canola	cytosol	11.93	16.96
CDY48160	Canola	cytosol	11.23	15.65
CDY41500	Canola	cytosol	15.44	15.44
CDY39570	Canola	cytosol	11.05	15.4
CDX88212	Canola	cytosol, golgi, nucleus, plastid	9.82	14.11
CDY53952	Canola	plastid	5.79	13.58
CDX80555	Canola	cytosol, golgi, nucleus, plastid	8.25	12.57
Os07t0164300-01	Rice	plasma membrane	0.0	0.0

Protein Annotations

EnsemblPlants:CDX92243	EnsemblPlantsGene:GSBRNA2T00153961001	Gene3D:3.40.800.20	GO:A0A078DY97	InterPro:His_deacetylse	InterPro:His_deacetylse_dom
InterPro:His_deacetylse_dom_sf	InterPro:IPR001876	InterPro:IPR037138	InterPro:Ureohydrolase_dom_sf	InterPro:Znf_RanBP2	PANTHER:PTHR10625
PANTHER:PTHR10625:SF180	PFAM:PF00850	PRINTS:PR01270	ProteinID:CDX92243	ProteinID:CDX92243.1	ScanProsite:PS01358
SEG:seg	SUPFAM:SSF52768	UniParc:UPI0004EE5839	MapMan:12.3.2.1.2	:	:

Description

BnaA05g21640D

Coordinates

chrLK031871:+:1038860..1042964

Molecular Weight (calculated)

62800.4 Da

IEP (calculated)

5.579

GRAVY (calculated)

-0.241

Length

570 amino acids

Sequence
(BLAST)

001: MVVETLDSSC DGSKRKHANG GEETHLDELS NGDNGVSSTK RARVSRGEMT FQDIYDADAL LNEEDEEDDS DWEPLQQQMM PVEFVRWCCV NCTMSNPGDM
101: VHCYICGEHK ESGILRHGYL ASPFFKDTGL TEVEEKCGGS SSATSSTAVG FDERMLLHSE FEVKAQPHPE RPDRLRAIAA SLATAGVFPG RCLPIHAREI
201: TKQELQMVHT SELVDAVNIT SQLLYSYFTT DTYANEYSAR AARLAAGLCA DLATEIYSGR VKNGFALVRP PGHHAGIKHA MGFCLHNNAA VAALVAQAAG
301: ARKVLIVDWD VHHGNGTQEI FEQNKSVLYI SLHRHEGGNF YPGTGAADEV GTNGAEGYCV NVPWSCGGVG DKDYIYAFQH VVLPIASAFS PDFVIVSAGF
401: DAARGDPLGC CDVTPAGYSR MTQMLGDICG GKMLVILEGG YNLRSISSSA TAVIKVLLGE NPENDDLPIA TTPSKAGLET VIEVMNIQMK FWPSLATAYS
501: KLLSEWETRL IENKKNQVKR KLVRVPTWWK WGRKKFMYRC LDSVEYFFSF KWQKELYYGA RAAPLDYLSI

Best Arabidopsis Sequence Match ( AT3G18520.1 )
(BLAST)

001: MVVETIERSC EGSKRRHVNG GDIAVPCSGE ECSNGDINVA PGVSAKRARV SREMTFEDIY GADALLNDDD DEDDDCDWEP VQAPMEFVKW CCVNCTMSNP
101: GDMVHCCICG EHKESGILRH GYLASPFFKD TGLIEVEEKY GGSSSATSST AVGFDERMLL HSEFEVKAQP HPERPDRLRA IAASLATAGV FPGRCLPINA
201: REITKQELQM VHTSEHVDAV DTTSQLLYSY FTSDTYANEY SARAARLAAG LCADLATDIF TGRVKNGFAL VRPPGHHAGV RHAMGFCLHN NAAVAALVAQ
301: AAGAKKVLIV DWDVHHGNGT QEIFEQNKSV LYISLHRHEG GNFYPGTGAA DEVGSNGGEG YCVNVPWSCG GVGDKDYIFA FQHVVLPIAS AFSPDFVIIS
401: AGFDAARGDP LGCCDVTPAG YSRMTQMLGD LCGGKMLVIL EGGYNLRSIS ASATAVIKVL LGENPENELP IATTPSVAGL QTVLDVLNIQ LEFWPSLAIS
501: YSKLLSELEA RLIENKKNQM KRKVVRVPTW WKWGRKKLLY NFLSARMISR SK

Arabidopsis Description

HDA15Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4J8S1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.