Factsheet for Zm00001d018864_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU88485	Sorghum	nucleus	88.85	87.44
TraesCS5D01G076100.1	Wheat	nucleus	72.7	73.53
TraesCS5A01G065300.1	Wheat	nucleus	72.37	72.96
TraesCS5B01G072100.1	Wheat	nucleus	72.05	72.64
HORVU5Hr1G017550.9	Barley	nucleus	71.24	71.82
Os07t0164100-01	Rice	nucleus	71.73	71.27
KRH56687	Soybean	nucleus	45.07	66.91
CDX82341	Canola	nucleus	40.87	56.98
KRH03799	Soybean	nucleus	48.47	55.25
Bra001708.1-P	Field mustard	nucleus	36.19	53.72
CDY24487	Canola	cytosol, nucleus, peroxisome	46.69	53.12
GSMUA_Achr8P20260_001	Banana	nucleus	53.8	52.61
PGSC0003DMT400014582	Potato	nucleus	51.37	52.13
Solyc03g119730.2.1	Tomato	nucleus	50.73	51.48
AT3G18520.2	Thale cress	cytosol	46.53	51.06
CDX92243	Canola	nucleus	46.53	50.53
Bra022329.1-P	Field mustard	nucleus	46.2	50.18
VIT_17s0000g04120.t01	Wine grape	nucleus	52.34	46.48
CDY52901	Canola	nucleus	29.24	38.84
Zm00001d042974_P001	Maize	mitochondrion	12.6	36.28
Zm00001d006780_P011	Maize	cytosol	26.33	23.15
Zm00001d016381_P001	Maize	nucleus	13.73	20.83
Zm00001d010152_P002	Maize	cytosol	16.48	18.12
Zm00001d010162_P002	Maize	cytosol	16.48	18.12
Zm00001d003813_P001	Maize	cytosol	12.76	17.67
Zm00001d050139_P001	Maize	nucleus	13.41	16.9
Zm00001d046348_P003	Maize	plastid	10.34	16.8
Zm00001d053595_P004	Maize	nucleus	13.89	16.63
Zm00001d046388_P001	Maize	nucleus	14.05	16.38
Zm00001d014076_P001	Maize	cytosol, mitochondrion, nucleus	2.42	15.46
Zm00001d018346_P001	Maize	mitochondrion	5.49	15.38
Zm00001d024221_P001	Maize	cytosol, nucleus, plastid, vacuole	4.68	14.8
Zm00001d039202_P001	Maize	nucleus	3.39	12.65
Os07t0164300-01	Rice	plasma membrane	0.16	0.33

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.40.800.20	UniProt:A0A1D6HSW2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325
GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009294	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787
GO:GO:0019538	GO:GO:0032041	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf
InterPro:IPR001876	InterPro:IPR037138	ProteinID:ONM51484.1	ProteinID:ONM51485.1	PFAM:PF00850	PRINTS:PR01270
ScanProsite:PS01358	PANTHER:PTHR10625	PANTHER:PTHR10625:SF180	SUPFAM:SSF52768	UniParc:UPI0008426E2A	InterPro:Ureohydrolase_dom_sf
EnsemblPlantsGene:Zm00001d018864	EnsemblPlants:Zm00001d018864_P002	EnsemblPlants:Zm00001d018864_T002	InterPro:Znf_RanBP2	SEG:seg	:

Description

histone deacetylase

Coordinates

chr7:-:7675366..7687966

Molecular Weight (calculated)

66175.2 Da

IEP (calculated)

6.039

GRAVY (calculated)

-0.190

Length

619 amino acids

Sequence
(BLAST)

001: MRPPSSGKKT EVSHSVGKCG VSDQACHGKC QSCGIDAKPF CAGVNEVSLL TGSHTDVEAS KENRGACSLN NDRADALEEE ANVSTARIGH VESADPGGSV
101: GVEKEIFMAV NEESEGEQAG ATLEDLFFFN GEEDDDSDWE PASRLVVNRW FCLNCTMPNV DKITYCMNCR ELPGSVVDGY DVFKKQIAQT ALLSADTGLL
201: PVSTAIGFDE RMLLHSELEV KPNPHPERPD RLRAIAASLA AAGIFPSKCA LVPPREITKE ELLMVHSPDH IESVEQTKNM LYSYFTSDTY ANGHSACAAK
301: LAAGLCADLA SLIVSGRVRN GFALVRPPGH HAGVKQAMGF CLHNNAAVAA LAAKRAGAKK VLIVDWDVHH GNGTQEIFDG DKTVLYISLH RHEDGNFYPG
401: TGAAHEIVGV LDGQGFSVNI PWSRGGVGDD DYIFAFQTVV LPIASEFAAD ITIISAGFDA ARGDPLGCCD VTPTGYSWMT SLLAGSSNGR LLVILEGGYN
501: LRSISSSATE VVKVLLGEGP NRASFVVSPS KEALSTVSQV LKIQQQFWPV LGPTYASLQA QQGSVSSNHS NELKKRKRPG GGPGPFWWKM GSKRLLYEAL
601: IEPRSRPRKL KGSTGSAAP

Best Arabidopsis Sequence Match ( AT3G18520.1 )
(BLAST)

001: MVVETIERSC EGSKRRHVNG GDIAVPCSGE ECSNGDINVA PGVSAKRARV SREMTFEDIY GADALLNDDD DEDDDCDWEP VQAPMEFVKW CCVNCTMSNP
101: GDMVHCCICG EHKESGILRH GYLASPFFKD TGLIEVEEKY GGSSSATSST AVGFDERMLL HSEFEVKAQP HPERPDRLRA IAASLATAGV FPGRCLPINA
201: REITKQELQM VHTSEHVDAV DTTSQLLYSY FTSDTYANEY SARAARLAAG LCADLATDIF TGRVKNGFAL VRPPGHHAGV RHAMGFCLHN NAAVAALVAQ
301: AAGAKKVLIV DWDVHHGNGT QEIFEQNKSV LYISLHRHEG GNFYPGTGAA DEVGSNGGEG YCVNVPWSCG GVGDKDYIFA FQHVVLPIAS AFSPDFVIIS
401: AGFDAARGDP LGCCDVTPAG YSRMTQMLGD LCGGKMLVIL EGGYNLRSIS ASATAVIKVL LGENPENELP IATTPSVAGL QTVLDVLNIQ LEFWPSLAIS
501: YSKLLSELEA RLIENKKNQM KRKVVRVPTW WKWGRKKLLY NFLSARMISR SK

Arabidopsis Description

HDA15Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4J8S1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.