CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018864_P002	Maize	nucleus	87.44	88.85
TraesCS5D01G076100.1	Wheat	nucleus	71.54	73.53
TraesCS5A01G065300.1	Wheat	nucleus	71.54	73.29
TraesCS5B01G072100.1	Wheat	nucleus	71.22	72.96
HORVU5Hr1G017550.9	Barley	nucleus	70.43	72.15
Os07t0164100-01	Rice	nucleus	71.22	71.91
KRH56687	Soybean	nucleus	44.52	67.15
CDX82341	Canola	nucleus	40.22	56.98
KRH03799	Soybean	nucleus	47.54	55.06
Bra001708.1-P	Field mustard	nucleus	35.77	53.96
CDY24487	Canola	cytosol, nucleus, peroxisome	46.1	53.31
GSMUA_Achr8P20260_001	Banana	nucleus	52.94	52.61
PGSC0003DMT400014582	Potato	nucleus	50.08	51.64
AT3G18520.2	Thale cress	cytosol	46.1	51.42
Solyc03g119730.2.1	Tomato	nucleus	49.6	51.15
CDX92243	Canola	nucleus	45.95	50.7
Bra022329.1-P	Field mustard	nucleus	45.63	50.35
VIT_17s0000g04120.t01	Wine grape	nucleus	50.87	45.91
CDY52901	Canola	nucleus	29.41	39.7
EES01710	Sorghum	plastid	19.08	27.91
EES19606	Sorghum	cytosol	17.17	27.69
EER97493	Sorghum	plastid	26.23	23.47
OQU83122	Sorghum	cytosol	10.97	19.27
EES10729	Sorghum	cytosol	12.72	18.6
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	12.88	17.69
EER89968	Sorghum	plastid	9.7	17.43
KXG29820	Sorghum	cytosol	9.38	16.76
EES04741	Sorghum	nucleus	13.67	16.63
KXG20269	Sorghum	nucleus	13.67	16.6
OQU87074	Sorghum	cytosol	12.4	15.85
Os07t0164300-01	Rice	plasma membrane	0.16	0.33

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.40.800.20	UniProt:A0A1W0W2A8	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325
GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009294	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787
GO:GO:0019538	GO:GO:0032041	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf
InterPro:IPR037138	EnsemblPlants:OQU88485	ProteinID:OQU88485	ProteinID:OQU88485.1	PFAM:PF00850	PRINTS:PR01270
PANTHER:PTHR10625	PANTHER:PTHR10625:SF180	EnsemblPlantsGene:SORBI_3002G043100	SUPFAM:SSF52768	UniParc:UPI0003C67817	InterPro:Ureohydrolase_dom_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:4102704..4114852

Molecular Weight (calculated)

67767.1 Da

IEP (calculated)

6.064

GRAVY (calculated)

-0.242

Length

629 amino acids

Sequence
(BLAST)

001: MRAPSSGKKS ETSHGMKCGV SDQACHGKCQ SCDIAAKPIC SGVDGVSSLT GSHTDVKASK ENCGACSLNN DRADSLEEEV KGSTARIGHV ESADPDGCVD
101: VKKESFMAVD DLPQEFEGEQ VGATLEDLFF FNGEEEDDSD WEPASRLVED RWFCFNCTMP IVDQITHCMN CRELKESAVD GYDVFKKQIA QTALLSADTE
201: LLPVSTAIGF DERMLLHSEL EVKPNPHPER PDRLRAIAAS LAAAGIFPSK CALVPPREIT KEELLMVHSP DHIESVEQTK NMLYSYFTSD TYANGHSACA
301: AKLAAGLCAD LASLMVSGRV RNGFALVRPP GHHAGVKQAM GFCLHNNAAV AALAAKRAGA KKVLIVDWDV HHGNGTQEIF EGDKTVLYIS LHRHEDGNFY
401: PGTGAAHEVG VLDGQGFSVN IPWSRGGVGD NDYIFAFQTV VLPIAAEFAA DITIISAGFD AARGDPLGGC DVTPVGYSWM TSLLADCSNG RLLVILEGGY
501: NLQSISSSAT EVVKVLLGDG PNRASFVGSP SREALKTVSQ VLKIQQRFWP VLGPTYASLQ AQQGSVSSNH ITKRNELKKR KHSGGLGPFW WKLGSKRLLY
601: EALFEHRRQR KIKGSGEGKA TGFSSTLDG

Best Arabidopsis Sequence Match ( AT3G18520.1 )
(BLAST)

001: MVVETIERSC EGSKRRHVNG GDIAVPCSGE ECSNGDINVA PGVSAKRARV SREMTFEDIY GADALLNDDD DEDDDCDWEP VQAPMEFVKW CCVNCTMSNP
101: GDMVHCCICG EHKESGILRH GYLASPFFKD TGLIEVEEKY GGSSSATSST AVGFDERMLL HSEFEVKAQP HPERPDRLRA IAASLATAGV FPGRCLPINA
201: REITKQELQM VHTSEHVDAV DTTSQLLYSY FTSDTYANEY SARAARLAAG LCADLATDIF TGRVKNGFAL VRPPGHHAGV RHAMGFCLHN NAAVAALVAQ
301: AAGAKKVLIV DWDVHHGNGT QEIFEQNKSV LYISLHRHEG GNFYPGTGAA DEVGSNGGEG YCVNVPWSCG GVGDKDYIFA FQHVVLPIAS AFSPDFVIIS
401: AGFDAARGDP LGCCDVTPAG YSRMTQMLGD LCGGKMLVIL EGGYNLRSIS ASATAVIKVL LGENPENELP IATTPSVAGL QTVLDVLNIQ LEFWPSLAIS
501: YSKLLSELEA RLIENKKNQM KRKVVRVPTW WKWGRKKLLY NFLSARMISR SK

Arabidopsis Description

HDA15Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4J8S1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.