CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU87074	Sorghum	cytosol	45.53	33.13
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	37.15	29.04
EES10729	Sorghum	cytosol	34.64	28.84
EES04741	Sorghum	nucleus	39.94	27.66
KXG20269	Sorghum	nucleus	39.94	27.61
EER89968	Sorghum	plastid	18.99	19.43
KXG29820	Sorghum	cytosol	18.99	19.32
EES19606	Sorghum	cytosol	17.88	16.41
EES01710	Sorghum	plastid	16.76	13.95
OQU88485	Sorghum	nucleus	19.27	10.97
EER97493	Sorghum	plastid	19.55	9.96

Protein Annotations

MapMan:12.3.2.1.1	Gene3D:3.40.800.20	UniProt:A0A1Z5RH95	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016575
GO:GO:0016787	GO:GO:0019538	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf
InterPro:IPR037138	EnsemblPlants:OQU83122	ProteinID:OQU83122	ProteinID:OQU83122.1	PFAM:PF00850	PRINTS:PR01270
PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF126	EnsemblPlantsGene:SORBI_3005G079400	SUPFAM:SSF52768	UniParc:UPI000B8BB2A2
InterPro:Ureohydrolase_dom_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:10412219..10414417

Molecular Weight (calculated)

38871.2 Da

IEP (calculated)

8.952

GRAVY (calculated)

-0.360

Length

358 amino acids

Sequence
(BLAST)

001: MGKRRSEHPQ APPLPPEPCA GDDGGGGVTK QKSVCYYTTT HASPTLTTAR QHEMVPHRVS MTHALINAYG RLARRHGPSP RRAGHRARPP ASSSPMTQTY
101: QIPPRPHAAP ADYYDATGAK TRRREAAEGY NLGEVWNERA RCVTNENPVI DNLWDYCRRY AGGSLAAARA LASGKYKVAI NWSGGMHHVC EGKAGGFCYV
201: NDIVFRRVLY LDINAHHGDG VKTAFVDDSR VSFHQFDGEF FPRTGAAVDV GGGDNGVCPT LINVPLQVGT RDGRYHQLFA PVVDRVMAVF EPDAVVMQCG
301: ADSLAGDWLA SLGLSVRGHA KCVRIVKGYG LPLLLLGGGG YTINHVASCW CYETKKIT

Best Arabidopsis Sequence Match ( AT3G44680.1 )
(BLAST)

001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS

Arabidopsis Description

HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.