CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046348_P003	Maize	plastid	94.0	86.35
Os06t0571100-01	Rice	plastid	80.86	80.4
TraesCS7D01G360500.1	Wheat	plastid	79.71	79.04
TraesCS7B01G266000.1	Wheat	plastid	79.14	78.47
TraesCS7A01G362600.1	Wheat	plastid	79.43	78.31
KXG29820	Sorghum	cytosol	75.43	75.0
Solyc08g065350.2.1	Tomato	cytosol	68.86	69.45
PGSC0003DMT400076991	Potato	cytosol	70.0	69.21
KRH05486	Soybean	cytosol	68.57	68.97
VIT_04s0008g00910.t01	Wine grape	plastid	70.29	68.52
Bra009877.1-P	Field mustard	cytosol	65.43	65.62
HORVU0Hr1G021730.1	Barley	cytosol	20.86	60.83
GSMUA_Achr10P...	Banana	plastid	75.71	60.36
AT5G26040.2	Thale cress	endoplasmic reticulum	66.57	60.21
CDX88212	Canola	cytosol, golgi, nucleus, plastid	65.71	57.93
CDX80555	Canola	cytosol, golgi, nucleus, plastid	60.29	56.42
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	26.0	19.87
OQU83122	Sorghum	cytosol	19.43	18.99
EES10729	Sorghum	cytosol	22.29	18.14
KXG20269	Sorghum	nucleus	25.43	17.18
OQU87074	Sorghum	cytosol	24.0	17.07
EES04741	Sorghum	nucleus	25.14	17.02
EES19606	Sorghum	cytosol	15.71	14.1
EES01710	Sorghum	plastid	14.86	12.09
EER97493	Sorghum	plastid	21.43	10.67
OQU88485	Sorghum	nucleus	17.43	9.7

Protein Annotations

EnsemblPlants:EER89968	EnsemblPlantsGene:SORBI_3010G172900	EntrezGene:8079300	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	InterPro:Ureohydrolase_dom_sf
PANTHER:PTHR43497	PANTHER:PTHR43497:SF2	PFAM:PF00850	PRINTS:PR01270	ProteinID:EER89968	ProteinID:EER89968.1
RefSeq:XP_002438601.1	SUPFAM:SSF52768	UniParc:UPI0001A898B8	UniProt:C5Z527	MapMan:12.3.2.1.3	:

Description

hypothetical protein

Coordinates

chr10:-:50823396..50827585

Molecular Weight (calculated)

38614.3 Da

IEP (calculated)

6.402

GRAVY (calculated)

-0.076

Length

350 amino acids

Sequence
(BLAST)

001: MASSSSPAPT LAGEALRQKR ILSSKLYLEV PSSKAPVVYS PAYDISFLGL EKLHPFDSAK WGRICRYLTR EGYLDKKRMV DPLEACKEDL LVVHTEAYLN
101: SLKSSFRVSN IVEVPPVSLV PNWIVHKKLL YPFRKQVGGS ILSAKLALER GWAINVGGGF HHCSADEGGG FCAYADISLC IQFAFARLNI SSVLIIDLDA
201: HQGNGHEKDF ANDGRVYIFD MYNAGIYPFD FTAKQYIDQK VELASGTETD EYLEQLDKAL EVCNSRFQPQ LIVYNAGTDI LDGDPLGRLK VSPEGVVTRD
301: EKVFTFAKDQ NIPLLMLTSG GYMKSSARVI ADSIINLSNK NLIGLGSELG

Best Arabidopsis Sequence Match ( AT5G26040.2 )
(BLAST)

001: MTHTRVISTW TELTRDLAIY LLFTFFAIKV FKFLFSCNRT SEISSFSMAT HPEALRRERI LNSKLYFDVP LSKVSIIYSS SYDISFMGIE KLHPFDSSKW
101: GRVCKFLVSD GFLEEKAIVE PLEASKIDLL VVHSENYLNS LKSSATVARI TEVAPVAFFP NFLVQQKVLY PFRKQVGGTI LAAKLATERG WAINIGGGFH
201: HCTAERGGGF CAFADISLCI HFAFLRLRIS RVMIIDLDAH QGNGHETDLG DDNRVYILDM YNPEIYPFDY RARRFIDQKV EVMSGTTTDE YLRKLDEALE
301: VASRNFQPEL VIYNAGTDIL DGDPLGLLKI SPDGITSRDE KVFRFAREKN IPLVMLTSGG YMKSSARVIA DSIENLSRQG LIQTRPE

Arabidopsis Description

HDA2Histone deacetylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q944K3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.