CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES19606

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G08460.1	EES19606	AT1G08460.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G284500.1	Wheat	cytosol, nucleus, plastid	87.44	86.77
TraesCS1A01G275300.1	Wheat	cytosol, nucleus, plastid	86.41	86.19
TraesCS1D01G274900.1	Wheat	cytosol, nucleus, plastid	80.26	85.52
Os05t0440250-01	Rice	cytosol, nucleus, plastid	85.9	85.46
HORVU1Hr1G074110.1	Barley	cytosol	84.87	85.09
GSMUA_Achr6P19520_001	Banana	cytosol	74.36	75.13
VIT_06s0080g00210.t01	Wine grape	nucleus	66.92	75.0
Solyc06g074080.2.1	Tomato	cytosol	70.77	71.69
PGSC0003DMT400015085	Potato	cytoskeleton, cytosol, nucleus	68.46	70.45
KRH26679	Soybean	cytosol	66.92	68.5
AT1G08460.1	Thale cress	cytosol	66.15	68.44
CDY22682	Canola	cytosol	66.67	67.36
Bra031628.1-P	Field mustard	cytosol	66.67	67.36
CDY06315	Canola	cytosol	65.64	66.32
Os05t0440300-01	Rice	cytosol, nucleus, plastid	63.33	62.53
Zm00001d010152_P002	Maize	cytosol	71.54	49.56
Zm00001d010162_P002	Maize	cytosol	71.54	49.56
EES01710	Sorghum	plastid	22.82	20.7
EES10729	Sorghum	cytosol	21.54	19.53
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	22.05	18.78
OQU83122	Sorghum	cytosol	16.41	17.88
OQU87074	Sorghum	cytosol	22.05	17.48
OQU88485	Sorghum	nucleus	27.69	17.17
EES04741	Sorghum	nucleus	22.56	17.02
KXG20269	Sorghum	nucleus	22.31	16.8
KXG29820	Sorghum	cytosol	14.62	16.19
EER89968	Sorghum	plastid	14.1	15.71
EER97493	Sorghum	plastid	26.41	14.65

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.40.800.20	EntrezGene:8058527	UniProt:C5YYR7	EnsemblPlants:EES19606	ProteinID:EES19606
ProteinID:EES19606.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0070932
InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	PFAM:PF00850	PRINTS:PR01270
PANTHER:PTHR10625	PANTHER:PTHR10625:SF121	EnsemblPlantsGene:SORBI_3009G153700	SUPFAM:SSF52768	unigene:Sbi.16711	UniParc:UPI0001A894F1
InterPro:Ureohydrolase_dom_sf	RefSeq:XP_002441176.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:50989141..50993395

Molecular Weight (calculated)

42254.0 Da

IEP (calculated)

5.741

GRAVY (calculated)

-0.231

Length

390 amino acids

Sequence
(BLAST)

001: MASESSPPPA EAPPPVPGNK LAVFWHEGML AHDAGRGVFD SGRDPGFLDV LDQHPENADR VRNMVSILRR GPIAHFLSWH SGRPAHASEL RSFHSSEYIE
101: ELVQANATGA KKLCEGTFLN PGSWGAVLLA AGTTLSAVKH ILDGHGNLAY ALVRPPGHHA QPGHADGYCF LNNAGLAVQL ALDSGRAKVA VVDIDVHYGN
201: GTAEGFYRTD NVLTMSLHMR HGSWGPSHPQ SGSVDEIGEG KGLGYNLNIP LPNGSGDAGY EYAMNELVVP AIDKFQPQLL VLVIGQDSSA FDPNGRQCLT
301: MEGYRKIGQI MRSLANRHSN GQILVVQEGG YHITYSAYCL HATLEGVLDL EAPLLDDPIA YYPEDEEYTM KVVDMVRSCW KESVPFLKDI

Best Arabidopsis Sequence Match ( AT1G08460.1 )
(BLAST)

001: MVTNRVDVFW HEGMLRHDAV EGVFDTGYDP GFLDVLEKHP ENADRVRNML SILRRGPIAP HVNWFTGLPA IVSELLMFHT SEYIEKLVEA DKSGERCEIA
101: AGTFMSPGSW EAALLAAGTT LSAMQHILDC HGKIAYALVR PPGHHSQPTQ ADGYCFLNNA ALAVKLALNS GSCSRVAVID IDVHYGNGTA EGFYTSDKVL
201: TVSLHMNHGS WGSSHPQKGS IDELGEDVGL GYNLNVPLPN GTGDRGYEYA MNELVVPAVR RFGPDMVVLV VGQDSSAFDP NGRQSLTMNG YRRIGQIMRG
301: VAEEHSHGRL LMVQEGGYHV TYAAYCLHAM LEGVLKIPEP HLSDPIAYYP EEEANAVAAV ESIKTYHTEF VPFLRGT

Arabidopsis Description

HDA8Histone deacetylase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q94EJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.