Factsheet for TraesCS1A01G275300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G275300.1
TraesCS1B01G284500.1
TraesCS1D01G274900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G08460.1	TraesCS1A01G275300.1	AT1G08460.1	21798944
AT1G08460.1	TraesCS1B01G284500.1	AT1G08460.1	21798944
AT1G08460.1	TraesCS1D01G274900.1	AT1G08460.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G274900.1	Wheat	cytosol, nucleus, plastid	89.51	95.63
TraesCS1B01G284500.1	Wheat	cytosol, nucleus, plastid	95.14	94.66
HORVU1Hr1G074110.1	Barley	cytosol	91.56	92.03
Os05t0440250-01	Rice	cytosol, nucleus, plastid	86.7	86.48
EES19606	Sorghum	cytosol	86.19	86.41
VIT_06s0080g00210.t01	Wine grape	nucleus	66.75	75.0
GSMUA_Achr6P19520_001	Banana	cytosol	72.38	73.32
Solyc06g074080.2.1	Tomato	cytosol	69.05	70.13
PGSC0003DMT400015085	Potato	cytoskeleton, cytosol, nucleus	67.26	69.39
AT1G08460.1	Thale cress	cytosol	65.98	68.44
KRH26679	Soybean	cytosol	65.47	67.19
Bra031628.1-P	Field mustard	cytosol	66.24	67.1
CDY22682	Canola	cytosol	66.24	67.1
CDY06315	Canola	cytosol	65.22	66.06
Os05t0440300-01	Rice	cytosol, nucleus, plastid	63.68	63.04
Zm00001d010152_P002	Maize	cytosol	65.73	45.65
Zm00001d010162_P002	Maize	cytosol	65.73	45.65
TraesCS1A01G317100.1	Wheat	mitochondrion	24.3	23.93
TraesCS5A01G119300.2	Wheat	mitochondrion	22.25	19.59
TraesCS2A01G293200.1	Wheat	cytosol	19.95	18.14
TraesCS6A01G181100.1	Wheat	cytosol	20.97	17.9
TraesCS5A01G065300.1	Wheat	nucleus	27.88	17.75
TraesCS4A01G213200.1	Wheat	cytosol, mitochondrion, nucleus	20.97	17.41
TraesCS5A01G295000.1	Wheat	cytosol	21.23	17.15
TraesCS6A01G184100.2	Wheat	nucleus	22.76	17.15
TraesCS7A01G365600.3	Wheat	nucleus	21.74	16.25
TraesCS7A01G362600.1	Wheat	plastid	14.07	15.49
TraesCS2A01G177100.1	Wheat	cytosol	26.6	15.01

Protein Annotations

EnsemblPlants:TraesCS1A01G275300.1	EnsemblPlantsGene:TraesCS1A01G275300	Gene3D:3.40.800.20	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf
InterPro:IPR037138	InterPro:Ureohydrolase_dom_sf	PANTHER:PTHR10625	PANTHER:PTHR10625:SF121	PFAM:PF00850	PRINTS:PR01270
SEG:seg	SUPFAM:SSF52768	TIGR:cd09996	MapMan:12.3.2.1.2	:	:

Description

No Description!

Coordinates

chr1A:-:469374878..469376982

Molecular Weight (calculated)

42241.9 Da

IEP (calculated)

5.603

GRAVY (calculated)

-0.218

Length

391 amino acids

Sequence
(BLAST)

001: MDSSSSSVPA AAEGALPAGE NLAVFWHEGM LAHDAGRGVF DSGRDPGFLD VLDHHPENAD RVRNMVSILR RGPIAPFLSW HSGTPAHASD LLSFHSPEYI
101: EELVQANASG PKKLCEGTFL NSGSWGAALL AAGTTLSAVR HILDGHGKIA YALVRPPGHH AQPDHADGYC FLNNAGLAVQ LALDSGRAKV AVVDIDVHYG
201: NGTAEGFYRT DNVLAISLHM KHGTWGPSHL QSGSADEIGE GKGLGYNLNI PLPNGSGDKG YEYAMNELVV PAIDKFQPQL LVFVIGQDSS MFDPNGRQCL
301: TMDGYRKIGQ IMRGVANRHS DGQMLIVQEG GYHISYSAYC LHATLEGVLN LEAPLLDDPI AYYPEDEKYT MEAVDVTKKR WKESIPFLKD I

Best Arabidopsis Sequence Match ( AT1G08460.1 )
(BLAST)

001: MVTNRVDVFW HEGMLRHDAV EGVFDTGYDP GFLDVLEKHP ENADRVRNML SILRRGPIAP HVNWFTGLPA IVSELLMFHT SEYIEKLVEA DKSGERCEIA
101: AGTFMSPGSW EAALLAAGTT LSAMQHILDC HGKIAYALVR PPGHHSQPTQ ADGYCFLNNA ALAVKLALNS GSCSRVAVID IDVHYGNGTA EGFYTSDKVL
201: TVSLHMNHGS WGSSHPQKGS IDELGEDVGL GYNLNVPLPN GTGDRGYEYA MNELVVPAVR RFGPDMVVLV VGQDSSAFDP NGRQSLTMNG YRRIGQIMRG
301: VAEEHSHGRL LMVQEGGYHV TYAAYCLHAM LEGVLKIPEP HLSDPIAYYP EEEANAVAAV ESIKTYHTEF VPFLRGT

Arabidopsis Description

HDA8Histone deacetylase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q94EJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.