Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G275300.1 | |
| TraesCS1B01G284500.1 | |
| TraesCS1D01G274900.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G08460.1 | TraesCS1A01G275300.1 | AT1G08460.1 | 21798944 |
| AT1G08460.1 | TraesCS1B01G284500.1 | AT1G08460.1 | 21798944 |
| AT1G08460.1 | TraesCS1D01G274900.1 | AT1G08460.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G274900.1 | Wheat | cytosol, nucleus, plastid | 89.31 | 95.9 |
| TraesCS1A01G275300.1 | Wheat | cytosol, nucleus, plastid | 94.66 | 95.14 |
| HORVU1Hr1G074110.1 | Barley | cytosol | 92.62 | 93.57 |
| Os05t0440250-01 | Rice | cytosol, nucleus, plastid | 88.3 | 88.52 |
| EES19606 | Sorghum | cytosol | 86.77 | 87.44 |
| VIT_06s0080g00210.t01 | Wine grape | nucleus | 67.18 | 75.86 |
| GSMUA_Achr6P19520_001 | Banana | cytosol | 73.79 | 75.13 |
| Solyc06g074080.2.1 | Tomato | cytosol | 68.96 | 70.39 |
| PGSC0003DMT400015085 | Potato | cytoskeleton, cytosol, nucleus | 67.43 | 69.92 |
| AT1G08460.1 | Thale cress | cytosol | 65.39 | 68.17 |
| KRH26679 | Soybean | cytosol | 65.9 | 67.98 |
| Bra031628.1-P | Field mustard | cytosol | 65.65 | 66.84 |
| CDY22682 | Canola | cytosol | 65.65 | 66.84 |
| CDY06315 | Canola | cytosol | 64.63 | 65.8 |
| Os05t0440300-01 | Rice | cytosol, nucleus, plastid | 64.12 | 63.8 |
| Zm00001d010152_P002 | Maize | cytosol | 65.9 | 46.0 |
| Zm00001d010162_P002 | Maize | cytosol | 65.9 | 46.0 |
| TraesCS1B01G329500.1 | Wheat | cytosol | 24.17 | 24.36 |
| TraesCS3B01G318000.1 | Wheat | cytoskeleton, cytosol, nucleus | 22.65 | 23.42 |
| TraesCS5B01G121300.1 | Wheat | vacuole | 22.14 | 19.21 |
| TraesCS2B01G309700.1 | Wheat | cytosol | 20.36 | 18.6 |
| TraesCS5B01G072100.1 | Wheat | nucleus | 27.99 | 17.92 |
| TraesCS6B01G210200.1 | Wheat | cytosol | 20.87 | 17.9 |
| TraesCS4B01G102600.1 | Wheat | cytosol, mitochondrion, nucleus | 21.12 | 17.62 |
| TraesCS6B01G212600.3 | Wheat | nucleus | 22.14 | 16.73 |
| TraesCS7B01G261800.1 | Wheat | nucleus | 21.37 | 16.18 |
| TraesCS7B01G266000.1 | Wheat | plastid | 13.74 | 15.3 |
| TraesCS2B01G204100.1 | Wheat | cytosol | 26.46 | 15.01 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G284500.1 | EnsemblPlantsGene:TraesCS1B01G284500 | Gene3D:3.40.800.20 | InterPro:His_deacetylse | InterPro:His_deacetylse_dom | InterPro:His_deacetylse_dom_sf |
| InterPro:IPR037138 | InterPro:Ureohydrolase_dom_sf | PANTHER:PTHR10625 | PANTHER:PTHR10625:SF121 | PFAM:PF00850 | PRINTS:PR01270 |
| SEG:seg | SUPFAM:SSF52768 | TIGR:cd09996 | MapMan:12.3.2.1.2 | : | : |
Description
No Description!
Coordinates
chr1B:-:493871423..493873896
Molecular Weight (calculated)
42477.3 Da
IEP (calculated)
5.847
GRAVY (calculated)
-0.207
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSSSSVPA AAAAEGAPPA GENLAVFWHE GMLAHDAGRG VFDSGRDPGF LDVLDHHPEN ADRVRNMVSI LRRGPIAPFL SWHSGTPAHA SELISFHSPE
101: YIEELVQANA SGPKKLCEGT FLNPGSWGAA LLAAGTTLSA MRHILDGHGK IAYALVRPPG HHAQPDHADG YCFLNNAGLA VHLALDSGRA KVAVVDIDVH
201: YGNGTAEGFY RTDNVLTISL HMKHGTWGPS HLQSGSSDEI GEGKGLGYNL NIPLPNGSGD KGYEYAMNEL VVPAIDKFKP QLLVFVIGQD SSMFDPNGRQ
301: CLTMDGYRKV GQIMRSLANQ HSDGQILIVQ EGGYHISYSA YCLHATLEGV LNLEAPLLDD PIAYYPEDEK YTMKVVDVMK KCWKESIPFL KDI
101: YIEELVQANA SGPKKLCEGT FLNPGSWGAA LLAAGTTLSA MRHILDGHGK IAYALVRPPG HHAQPDHADG YCFLNNAGLA VHLALDSGRA KVAVVDIDVH
201: YGNGTAEGFY RTDNVLTISL HMKHGTWGPS HLQSGSSDEI GEGKGLGYNL NIPLPNGSGD KGYEYAMNEL VVPAIDKFKP QLLVFVIGQD SSMFDPNGRQ
301: CLTMDGYRKV GQIMRSLANQ HSDGQILIVQ EGGYHISYSA YCLHATLEGV LNLEAPLLDD PIAYYPEDEK YTMKVVDVMK KCWKESIPFL KDI
001: MVTNRVDVFW HEGMLRHDAV EGVFDTGYDP GFLDVLEKHP ENADRVRNML SILRRGPIAP HVNWFTGLPA IVSELLMFHT SEYIEKLVEA DKSGERCEIA
101: AGTFMSPGSW EAALLAAGTT LSAMQHILDC HGKIAYALVR PPGHHSQPTQ ADGYCFLNNA ALAVKLALNS GSCSRVAVID IDVHYGNGTA EGFYTSDKVL
201: TVSLHMNHGS WGSSHPQKGS IDELGEDVGL GYNLNVPLPN GTGDRGYEYA MNELVVPAVR RFGPDMVVLV VGQDSSAFDP NGRQSLTMNG YRRIGQIMRG
301: VAEEHSHGRL LMVQEGGYHV TYAAYCLHAM LEGVLKIPEP HLSDPIAYYP EEEANAVAAV ESIKTYHTEF VPFLRGT
101: AGTFMSPGSW EAALLAAGTT LSAMQHILDC HGKIAYALVR PPGHHSQPTQ ADGYCFLNNA ALAVKLALNS GSCSRVAVID IDVHYGNGTA EGFYTSDKVL
201: TVSLHMNHGS WGSSHPQKGS IDELGEDVGL GYNLNVPLPN GTGDRGYEYA MNELVVPAVR RFGPDMVVLV VGQDSSAFDP NGRQSLTMNG YRRIGQIMRG
301: VAEEHSHGRL LMVQEGGYHV TYAAYCLHAM LEGVLKIPEP HLSDPIAYYP EEEANAVAAV ESIKTYHTEF VPFLRGT
Arabidopsis Description
HDA8Histone deacetylase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q94EJ2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.