Factsheet for TraesCS5B01G072100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G065300.1	Wheat	nucleus	98.37	98.37
TraesCS5D01G076100.1	Wheat	nucleus	97.07	97.39
HORVU5Hr1G017550.9	Barley	nucleus	95.11	95.11
Os07t0164100-01	Rice	nucleus	76.87	75.76
Zm00001d018864_P002	Maize	nucleus	72.64	72.05
OQU88485	Sorghum	nucleus	72.96	71.22
KRH56687	Soybean	nucleus	46.25	68.11
CDX82341	Canola	nucleus	42.35	58.56
KRH03799	Soybean	nucleus	49.67	56.17
Bra001708.1-P	Field mustard	nucleus	37.78	55.64
CDY24487	Canola	cytosol, nucleus, peroxisome	49.02	55.33
GSMUA_Achr8P20260_001	Banana	nucleus	56.51	54.82
AT3G18520.2	Thale cress	cytosol	49.02	53.37
CDX92243	Canola	nucleus	48.7	52.46
Bra022329.1-P	Field mustard	nucleus	48.37	52.11
PGSC0003DMT400014582	Potato	nucleus	51.14	51.48
Solyc03g119730.2.1	Tomato	nucleus	50.81	51.15
VIT_17s0000g04120.t01	Wine grape	nucleus	52.28	46.05
CDY52901	Canola	nucleus	29.8	39.27
TraesCS1B01G329500.1	Wheat	cytosol	23.13	36.41
TraesCS3B01G318000.1	Wheat	cytoskeleton, cytosol, nucleus	17.59	28.42
TraesCS1B01G284500.1	Wheat	cytosol, nucleus, plastid	17.92	27.99
TraesCS5B01G121300.1	Wheat	vacuole	18.4	24.94
TraesCS2B01G204100.1	Wheat	cytosol	24.76	21.93
TraesCS2B01G309700.1	Wheat	cytosol	14.33	20.47
TraesCS6B01G210200.1	Wheat	cytosol	14.17	19.0
TraesCS7B01G261800.1	Wheat	nucleus	15.47	18.3
TraesCS7B01G266000.1	Wheat	plastid	10.26	17.85
TraesCS6B01G212600.3	Wheat	nucleus	14.98	17.69
TraesCS4B01G102600.1	Wheat	cytosol, mitochondrion, nucleus	13.19	17.2
Os07t0164300-01	Rice	plasma membrane	0.16	0.33

Protein Annotations

EnsemblPlants:TraesCS5B01G072100.1	EnsemblPlantsGene:TraesCS5B01G072100	Gene3D:3.40.800.20	GO:GO:0008150	GO:GO:0009294	GO:GO:0009987
InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR001876	InterPro:IPR037138	InterPro:Ureohydrolase_dom_sf
InterPro:Znf_RanBP2	PANTHER:PTHR10625	PANTHER:PTHR10625:SF180	PFAM:PF00850	PRINTS:PR01270	ScanProsite:PS01358
SEG:seg	SUPFAM:SSF52768	TIGR:cd09992	MapMan:12.3.2.1.2	:	:

Description

No Description!

Coordinates

chr5B:+:83783448..83794062

Molecular Weight (calculated)

66141.2 Da

IEP (calculated)

6.034

GRAVY (calculated)

-0.258

Length

614 amino acids

Sequence
(BLAST)

001: MTSNMRPLNS KKGEVPSDGR ENCGVSDQAF HGKCQSCDGV GKPSYPRANG VSLKESGTCS FSCDHANALL VDGPKGSPAR PGHIDSADCG QHGCLHAKNE
101: SCMPCNDLQQ ESDREQAGDT LDDLFFFNDE EDDDIDWEPS ARLAENRWFC LNCTMPNLDE VKHCLNCHEL KGSEVAAGYD VFKTHIARAA LVSANTASVL
201: VSTAIGFDER MLLHSEMEIK PNPHPERPNR LRAIAASLAA AGIFPSKCAL VPPREITKEE LVMVHTSDHV ESVEQTKNML YSYFTSDTYA NGHSACAAKL
301: AAGLCADLAS LIVSEHVQNG FALVRPPGHH AGVKQAMGFC LHNNAAVAAL AAQKAGAKKV LIVDWDVHHG NGTQEIFEGN KSVLYISLHR HEDGSFYPGT
401: GAADEVGVLD GKGFSVNIPW SCGGVGDNDY IFAFQHVVLP IATEFAPDIT IISAGFDAAR GDPLGCCDVT PAGYSQMTSM LTACSEGKLL VILEGGYNLR
501: SISSSATEVV KVLLGDGPSY GTDAAAPSKE GMQTVLQVLD IQQKYWPVLV PIFASLQAQQ GPTSSKYVNA ENKLKRRMLT GGPGPVWWKW GSKRLLYEVL
601: FEGRRPRKSR AKGE

Best Arabidopsis Sequence Match ( AT3G18520.1 )
(BLAST)

001: MVVETIERSC EGSKRRHVNG GDIAVPCSGE ECSNGDINVA PGVSAKRARV SREMTFEDIY GADALLNDDD DEDDDCDWEP VQAPMEFVKW CCVNCTMSNP
101: GDMVHCCICG EHKESGILRH GYLASPFFKD TGLIEVEEKY GGSSSATSST AVGFDERMLL HSEFEVKAQP HPERPDRLRA IAASLATAGV FPGRCLPINA
201: REITKQELQM VHTSEHVDAV DTTSQLLYSY FTSDTYANEY SARAARLAAG LCADLATDIF TGRVKNGFAL VRPPGHHAGV RHAMGFCLHN NAAVAALVAQ
301: AAGAKKVLIV DWDVHHGNGT QEIFEQNKSV LYISLHRHEG GNFYPGTGAA DEVGSNGGEG YCVNVPWSCG GVGDKDYIFA FQHVVLPIAS AFSPDFVIIS
401: AGFDAARGDP LGCCDVTPAG YSRMTQMLGD LCGGKMLVIL EGGYNLRSIS ASATAVIKVL LGENPENELP IATTPSVAGL QTVLDVLNIQ LEFWPSLAIS
501: YSKLLSELEA RLIENKKNQM KRKVVRVPTW WKWGRKKLLY NFLSARMISR SK

Arabidopsis Description

HDA15Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4J8S1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.