Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G065300.1 | Wheat | nucleus | 95.93 | 95.93 |
| TraesCS5B01G072100.1 | Wheat | nucleus | 95.11 | 95.11 |
| TraesCS5D01G076100.1 | Wheat | nucleus | 94.63 | 94.93 |
| Os07t0164100-01 | Rice | nucleus | 76.06 | 74.96 |
| Zm00001d018864_P002 | Maize | nucleus | 71.82 | 71.24 |
| OQU88485 | Sorghum | nucleus | 72.15 | 70.43 |
| KRH56687 | Soybean | nucleus | 46.09 | 67.87 |
| CDX82341 | Canola | nucleus | 41.86 | 57.88 |
| KRH03799 | Soybean | nucleus | 49.02 | 55.43 |
| Bra001708.1-P | Field mustard | nucleus | 37.3 | 54.92 |
| CDY24487 | Canola | cytosol, nucleus, peroxisome | 48.53 | 54.78 |
| GSMUA_Achr8P20260_001 | Banana | nucleus | 55.7 | 54.03 |
| AT3G18520.2 | Thale cress | cytosol | 48.53 | 52.84 |
| CDX92243 | Canola | nucleus | 48.21 | 51.93 |
| Bra022329.1-P | Field mustard | nucleus | 47.88 | 51.58 |
| PGSC0003DMT400014582 | Potato | nucleus | 51.14 | 51.48 |
| Solyc03g119730.2.1 | Tomato | nucleus | 50.65 | 50.98 |
| VIT_17s0000g04120.t01 | Wine grape | nucleus | 52.12 | 45.91 |
| CDY52901 | Canola | nucleus | 29.48 | 38.84 |
| HORVU1Hr1G066760.1 | Barley | plastid | 23.13 | 32.42 |
| HORVU1Hr1G074110.1 | Barley | cytosol | 17.43 | 27.51 |
| HORVU5Hr1G037920.1 | Barley | cytosol | 18.57 | 25.22 |
| HORVU2Hr1G032540.2 | Barley | plastid | 25.9 | 21.69 |
| HORVU2Hr1G072570.5 | Barley | plastid | 9.77 | 21.35 |
| HORVU0Hr1G021740.4 | Barley | cytosol | 2.61 | 20.78 |
| HORVU4Hr1G044060.1 | Barley | cytosol | 12.87 | 19.46 |
| HORVU5Hr1G077800.1 | Barley | cytosol | 14.98 | 19.01 |
| HORVU5Hr1G077760.1 | Barley | cytosol | 14.98 | 18.66 |
| HORVU6Hr1G038010.6 | Barley | cytosol | 13.84 | 18.52 |
| HORVU7Hr1G085870.2 | Barley | nucleus | 14.5 | 17.15 |
| HORVU6Hr1G038710.1 | Barley | cytosol | 14.33 | 16.99 |
| HORVU2Hr1G072600.1 | Barley | endoplasmic reticulum | 6.35 | 15.73 |
| HORVU0Hr1G021730.1 | Barley | cytosol | 2.12 | 10.83 |
| Os07t0164300-01 | Rice | plasma membrane | 0.16 | 0.33 |
Protein Annotations
| MapMan:12.3.2.1.2 | Gene3D:3.40.800.20 | UniProt:A0A287QH99 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006325 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009294 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016569 | GO:GO:0016575 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0032041 | GO:GO:0070932 | EnsemblPlantsGene:HORVU5Hr1G017550 | EnsemblPlants:HORVU5Hr1G017550.9 | InterPro:His_deacetylse |
| InterPro:His_deacetylse_dom | InterPro:His_deacetylse_dom_sf | InterPro:IPR001876 | InterPro:IPR037138 | PFAM:PF00850 | PRINTS:PR01270 |
| ScanProsite:PS01358 | PANTHER:PTHR10625 | PANTHER:PTHR10625:SF180 | SUPFAM:SSF52768 | UniParc:UPI000B465066 | InterPro:Ureohydrolase_dom_sf |
| InterPro:Znf_RanBP2 | SEG:seg | : | : | : | : |
Description
Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A287QH99]
Coordinates
chrchr5H:+:68015888..68023416
Molecular Weight (calculated)
66050.2 Da
IEP (calculated)
6.501
GRAVY (calculated)
-0.284
Length
614 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSNMRPLNS KKGEVPSHGR ENCGVSDQAF HGKCQSCDSV GKSPHSRANG VSLKESGTCS FSCDHANALL VDGPKGSPAR PGHIDSTNCD QHGCLHAKNE
101: SCMPCNDLQE ESDREQAGDT LDDLFFFNDE EDDDIDWEPS ARLAENRWFC LNCTMPNLDE VKHCLNCHEL KGSEVAAGYD VFKTHIARAA LVSADTASVL
201: VSTAIGFDER MLLHSEMETK PNPHPERPNR LRAIAASLXX XXIFPSKCAL VPPREITKEE LVMVHTSDHV ESVEQTKNML YSYFTSDTYA NGHSACAAKL
301: AAGLCADLAS LIVSGRVRNG FALVRPPGHH AGVKQAMGFC LHNNAAVAAL AAQKAGAKKV LIVDWDVHHG NGTQEIFEGN KSILYISLHR HEDGSFYPGT
401: GAADEVGVLD GKGFSVNIPW SCGGVGDNDY IFAFQHVVLP IATEFAPDIT IISAGFDAAR GDPLGCCDVT PAGYSQMTSM LTACSEGKLL VILEGGYNLR
501: SISSSATEVV KVLLADGPSY GTDAAAPSKE GMQTVLHVLD IQRKYWPVLV PIFASLQAQQ GQTSSKYANA ENKLKRRMLM GGPGPVWWKW GSKRLLYEIL
601: FEGRRPRKSK ARGK
101: SCMPCNDLQE ESDREQAGDT LDDLFFFNDE EDDDIDWEPS ARLAENRWFC LNCTMPNLDE VKHCLNCHEL KGSEVAAGYD VFKTHIARAA LVSADTASVL
201: VSTAIGFDER MLLHSEMETK PNPHPERPNR LRAIAASLXX XXIFPSKCAL VPPREITKEE LVMVHTSDHV ESVEQTKNML YSYFTSDTYA NGHSACAAKL
301: AAGLCADLAS LIVSGRVRNG FALVRPPGHH AGVKQAMGFC LHNNAAVAAL AAQKAGAKKV LIVDWDVHHG NGTQEIFEGN KSILYISLHR HEDGSFYPGT
401: GAADEVGVLD GKGFSVNIPW SCGGVGDNDY IFAFQHVVLP IATEFAPDIT IISAGFDAAR GDPLGCCDVT PAGYSQMTSM LTACSEGKLL VILEGGYNLR
501: SISSSATEVV KVLLADGPSY GTDAAAPSKE GMQTVLHVLD IQRKYWPVLV PIFASLQAQQ GQTSSKYANA ENKLKRRMLM GGPGPVWWKW GSKRLLYEIL
601: FEGRRPRKSK ARGK
001: MVVETIERSC EGSKRRHVNG GDIAVPCSGE ECSNGDINVA PGVSAKRARV SREMTFEDIY GADALLNDDD DEDDDCDWEP VQAPMEFVKW CCVNCTMSNP
101: GDMVHCCICG EHKESGILRH GYLASPFFKD TGLIEVEEKY GGSSSATSST AVGFDERMLL HSEFEVKAQP HPERPDRLRA IAASLATAGV FPGRCLPINA
201: REITKQELQM VHTSEHVDAV DTTSQLLYSY FTSDTYANEY SARAARLAAG LCADLATDIF TGRVKNGFAL VRPPGHHAGV RHAMGFCLHN NAAVAALVAQ
301: AAGAKKVLIV DWDVHHGNGT QEIFEQNKSV LYISLHRHEG GNFYPGTGAA DEVGSNGGEG YCVNVPWSCG GVGDKDYIFA FQHVVLPIAS AFSPDFVIIS
401: AGFDAARGDP LGCCDVTPAG YSRMTQMLGD LCGGKMLVIL EGGYNLRSIS ASATAVIKVL LGENPENELP IATTPSVAGL QTVLDVLNIQ LEFWPSLAIS
501: YSKLLSELEA RLIENKKNQM KRKVVRVPTW WKWGRKKLLY NFLSARMISR SK
101: GDMVHCCICG EHKESGILRH GYLASPFFKD TGLIEVEEKY GGSSSATSST AVGFDERMLL HSEFEVKAQP HPERPDRLRA IAASLATAGV FPGRCLPINA
201: REITKQELQM VHTSEHVDAV DTTSQLLYSY FTSDTYANEY SARAARLAAG LCADLATDIF TGRVKNGFAL VRPPGHHAGV RHAMGFCLHN NAAVAALVAQ
301: AAGAKKVLIV DWDVHHGNGT QEIFEQNKSV LYISLHRHEG GNFYPGTGAA DEVGSNGGEG YCVNVPWSCG GVGDKDYIFA FQHVVLPIAS AFSPDFVIIS
401: AGFDAARGDP LGCCDVTPAG YSRMTQMLGD LCGGKMLVIL EGGYNLRSIS ASATAVIKVL LGENPENELP IATTPSVAGL QTVLDVLNIQ LEFWPSLAIS
501: YSKLLSELEA RLIENKKNQM KRKVVRVPTW WKWGRKKLLY NFLSARMISR SK
Arabidopsis Description
HDA15Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4J8S1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.