CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03799	Soybean	nucleus	91.85	70.53
CDX82341	Canola	nucleus	64.75	60.81
Bra001708.1-P	Field mustard	nucleus	55.4	55.4
CDY24487	Canola	cytosol, nucleus, peroxisome	69.78	53.49
PGSC0003DMT400014582	Potato	nucleus	75.54	51.64
Solyc03g119730.2.1	Tomato	nucleus	74.1	50.66
AT3G18520.2	Thale cress	cytosol	68.35	50.53
CDX92243	Canola	nucleus	69.06	50.53
Bra022329.1-P	Field mustard	nucleus	68.82	50.35
VIT_17s0000g04120.t01	Wine grape	nucleus	78.66	47.06
TraesCS5D01G076100.1	Wheat	nucleus	69.06	47.06
GSMUA_Achr8P20260_001	Banana	nucleus	70.98	46.76
TraesCS5A01G065300.1	Wheat	nucleus	68.82	46.74
TraesCS5B01G072100.1	Wheat	nucleus	68.11	46.25
HORVU5Hr1G017550.9	Barley	nucleus	67.87	46.09
Zm00001d018864_P002	Maize	nucleus	66.91	45.07
Os07t0164100-01	Rice	nucleus	66.67	44.62
OQU88485	Sorghum	nucleus	67.15	44.52
CDY52901	Canola	nucleus	39.33	35.19
KRH26679	Soybean	cytosol	27.1	29.66
KRH59585	Soybean	plastid	26.14	25.95
KRH56821	Soybean	nucleus	36.93	23.48
KRH03123	Soybean	cytosol	36.21	23.02
KRH54336	Soybean	cytosol, nucleus, plastid	8.63	22.5
KRH30495	Soybean	cytosol	20.86	20.28
KRH25183	Soybean	cytosol	20.86	20.28
KRH05486	Soybean	cytosol	14.39	17.24
KRH03236	Soybean	nucleus	19.18	16.95
KRH77972	Soybean	nucleus	20.14	16.9
KRH51318	Soybean	nucleus	20.14	16.9
KRH27562	Soybean	nucleus	20.14	16.9
KRH57122	Soybean	nucleus	19.18	16.81
KRH60609	Soybean	nucleus	19.9	16.7
KRH63609	Soybean	cytosol	18.47	16.56
KRH54335	Soybean	cytosol, nucleus, plastid	7.67	13.68
KRH63610	Soybean	cytosol	6.24	13.2
KRH16462	Soybean	nucleus	1.44	7.69
Os07t0164300-01	Rice	plasma membrane	0.0	0.0

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.40.800.20	UniProt:A0A0R0K0I2	EMBL:ACUP02002797	EnsemblPlantsGene:GLYMA_05G012900	GO:GO:0003674
GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575
GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_dom
InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	EnsemblPlants:KRH56687	ProteinID:KRH56687	ProteinID:KRH56687.1	PFAM:PF00850
PRINTS:PR01270	PANTHER:PTHR10625	PANTHER:PTHR10625:SF180	SUPFAM:SSF52768	UniParc:UPI0006EDAAB8	InterPro:Ureohydrolase_dom_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:1200699..1206341

Molecular Weight (calculated)

45288.4 Da

IEP (calculated)

7.638

GRAVY (calculated)

-0.039

Length

417 amino acids

Sequence
(BLAST)

001: MHVGSQESVA NSSTAIGFDE RMLLHAEVEK KSTLHPERPD RLQAIAASLA RAGIFPGKCY SIPAREITPE ELITVHSLEH IESVEVTSES LSSYFTSDTY
101: ANEHSALAAR LAAGLCADLA SAIVSGRAKN GFALVRPPGH HAGVRQAMGF CLHNNAAVAA LAAQAAGARK VLILDWDVHH GNGTQEIFEQ NKSVLYISLH
201: RHEGGKFYPG TGAAEEVGSM GAEGFCVNIP WSQGGVGDND YIFAFQHVVL PIAAEFNPDL TIVSAGFDAA RGDPLGCCDI TPSGYAHMTN MLNALSGGKL
301: LVILEGGYNL RSISSSATAV IKVLLGESPG CELENSFPSK AGLQTVLEVL KIQMNFWPAL GPIFVNLESQ WRMYCFERKR KQIKKRRRVL VPMWRWGRKS
401: LLFHFLNGHH NVKSKLC

Best Arabidopsis Sequence Match ( AT3G18520.1 )
(BLAST)

001: MVVETIERSC EGSKRRHVNG GDIAVPCSGE ECSNGDINVA PGVSAKRARV SREMTFEDIY GADALLNDDD DEDDDCDWEP VQAPMEFVKW CCVNCTMSNP
101: GDMVHCCICG EHKESGILRH GYLASPFFKD TGLIEVEEKY GGSSSATSST AVGFDERMLL HSEFEVKAQP HPERPDRLRA IAASLATAGV FPGRCLPINA
201: REITKQELQM VHTSEHVDAV DTTSQLLYSY FTSDTYANEY SARAARLAAG LCADLATDIF TGRVKNGFAL VRPPGHHAGV RHAMGFCLHN NAAVAALVAQ
301: AAGAKKVLIV DWDVHHGNGT QEIFEQNKSV LYISLHRHEG GNFYPGTGAA DEVGSNGGEG YCVNVPWSCG GVGDKDYIFA FQHVVLPIAS AFSPDFVIIS
401: AGFDAARGDP LGCCDVTPAG YSRMTQMLGD LCGGKMLVIL EGGYNLRSIS ASATAVIKVL LGENPENELP IATTPSVAGL QTVLDVLNIQ LEFWPSLAIS
501: YSKLLSELEA RLIENKKNQM KRKVVRVPTW WKWGRKKLLY NFLSARMISR SK

Arabidopsis Description

HDA15Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4J8S1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.