CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60609	Soybean	nucleus	73.08	11.47
KRH51318	Soybean	nucleus	71.79	11.27
KRH27562	Soybean	nucleus	67.95	10.66
KRH77972	Soybean	nucleus	66.67	10.46
KRH63609	Soybean	cytosol	46.15	7.74
KRH03236	Soybean	nucleus	44.87	7.42
KRH57122	Soybean	nucleus	44.87	7.35
KRH25183	Soybean	cytosol	38.46	6.99
KRH54336	Soybean	cytosol, nucleus, plastid	14.1	6.88
KRH30495	Soybean	cytosol	35.9	6.53
KRH54335	Soybean	cytosol, nucleus, plastid	5.13	1.71
KRH56687	Soybean	nucleus	7.69	1.44
KRH56821	Soybean	nucleus	11.54	1.37
KRH03123	Soybean	cytosol	11.54	1.37
KRH59585	Soybean	plastid	5.13	0.95
KRH03799	Soybean	nucleus	6.41	0.92
KRH63610	Soybean	cytosol	1.28	0.51
KRH05486	Soybean	cytosol	1.28	0.29
KRH26679	Soybean	cytosol	0.0	0.0

Protein Annotations

EMBL:ACUP02008892	EnsemblPlants:KRH16462	EnsemblPlantsGene:GLYMA_14G157100	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	InterPro:His_deacetylse	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	PANTHER:PTHR10625	PANTHER:PTHR10625:SF178
ProteinID:KRH16462	ProteinID:KRH16462.1	UniParc:UPI000296070C	UniProt:K7M728	MapMan:12.3.2.1.1	:

Description

hypothetical protein

Coordinates

chr14:+:34537801..34538037

Molecular Weight (calculated)

9192.9 Da

IEP (calculated)

6.072

GRAVY (calculated)

-0.528

Length

78 amino acids

Sequence
(BLAST)

1: MPQHKYYEYF GPDYTLHVGP SNMENKNSRH LLEEIRSKLC ENLSKLQHAP SVQFQERPLD SDLGEVNLYC LIFYFIGV

Best Arabidopsis Sequence Match ( AT4G38130.2 )
(BLAST)

001: MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYATDR
201: VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI DDESYHLLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTETPE
401: VDEDQEDGDK RWDPDSDMDV DDDRKPIPSR VKREAVEPDT KDKDGLKGIM ERGKGCEVEV DESGSTKVK

Arabidopsis Description

HDA19Histone deacetylase 19 [Source:UniProtKB/Swiss-Prot;Acc:O22446]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.