CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77972	Soybean	nucleus	96.18	96.18
Zm00001d016381_P001	Maize	nucleus	67.2	81.86
KRH60609	Soybean	nucleus	80.08	80.08
Solyc09g091440.2.1	Tomato	nucleus	79.48	79.32
KRH51318	Soybean	nucleus	79.07	79.07
GSMUA_Achr2P19590_001	Banana	nucleus	69.42	75.82
GSMUA_Achr5P06320_001	Banana	nucleus	70.62	75.65
Os06t0583400-01	Rice	nucleus	78.07	74.9
EES04741	Sorghum	nucleus	77.67	74.66
HORVU6Hr1G038710.1	Barley	cytosol	77.06	73.94
KXG20269	Sorghum	nucleus	76.86	73.75
Zm00001d053595_P004	Maize	nucleus	76.66	73.69
TraesCS7D01G356800.1	Wheat	nucleus	76.86	73.6
HORVU7Hr1G085870.2	Barley	nucleus	76.86	73.6
TraesCS6A01G184100.2	Wheat	nucleus	76.86	73.6
TraesCS6B01G212600.3	Wheat	nucleus	76.86	73.46
PGSC0003DMT400076252	Potato	nucleus	79.07	73.32
TraesCS7B01G261800.1	Wheat	nucleus	76.46	73.22
TraesCS7A01G365600.3	Wheat	nucleus	76.46	72.66
GSMUA_AchrUn_...	Banana	cytosol	57.55	72.59
Zm00001d046388_P001	Maize	nucleus	74.65	69.87
Os02t0215200-02	Rice	cytoskeleton, cytosol, nucleus	71.03	69.35
Zm00001d014076_P001	Maize	cytosol, mitochondrion, nucleus	13.28	68.04
KRH16462	Soybean	nucleus	10.66	67.95
Os02t0214900-01	Rice	cytoskeleton, cytosol, nucleus	69.62	67.84
KRH54336	Soybean	cytosol, nucleus, plastid	21.53	66.88
TraesCS6D01G171000.1	Wheat	golgi	77.06	66.72
GSMUA_Achr8P04190_001	Banana	cytosol, nucleus, plasma membrane	57.34	66.13
KRH03236	Soybean	nucleus	59.56	62.71
KRH63609	Soybean	cytosol	58.35	62.37
GSMUA_Achr1P14440_001	Banana	cytosol	52.11	62.26
KRH57122	Soybean	nucleus	59.56	62.18
KRH30495	Soybean	cytosol	49.7	57.58
KRH25183	Soybean	cytosol	49.7	57.58
KRH54335	Soybean	cytosol, nucleus, plastid	25.35	53.85
KRH63610	Soybean	cytosol	20.12	50.76
Zm00001d039202_P001	Maize	nucleus	16.7	50.0
Zm00001d018346_P001	Maize	mitochondrion	20.93	47.06
KRH05486	Soybean	cytosol	17.5	25.0
KRH26679	Soybean	cytosol	15.9	20.73
KRH56687	Soybean	nucleus	16.9	20.14
KRH59585	Soybean	plastid	15.69	18.57
KRH56821	Soybean	nucleus	21.73	16.46
KRH03123	Soybean	cytosol	21.53	16.31
KRH03799	Soybean	nucleus	17.5	16.02

Protein Annotations

EntrezGene:100804681	MapMan:12.3.2.1.1	MapMan:12.3.2.4.1	Gene3D:3.40.800.20	EMBL:ACUP02006726	ncoils:Coil
EnsemblPlantsGene:GLYMA_11G000300	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351
GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041
GO:GO:0046872	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf
UniProt:I1LFN1	InterPro:IPR037138	EnsemblPlants:KRH27562	ProteinID:KRH27562	ProteinID:KRH27562.1	PFAM:PF00850
PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF178	SUPFAM:SSF52768
UniParc:UPI000233CB48	InterPro:Ureohydrolase_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:14155..24130

Molecular Weight (calculated)

56135.1 Da

IEP (calculated)

5.112

GRAVY (calculated)

-0.536

Length

497 amino acids

Sequence
(BLAST)

001: MESGGNSLPS GSDGVKRKVS YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPTAAKDR DLCKFHADDY VAFLRGITPE TQQDQLRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGAL KLNHGACDVA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKIHERVLY VDIDIHHGDG VEEAFYTTDR
201: VMTVSFHKFG DYFPGTGDIR DIGYGKGKYY SLNVPLDDGI DDESYQSLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVRHMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETSVALGI ELDDKMPQHE YYEYFGPDYT LHVAPSNMEN KNSRHLLDEI RAKLLDNLSR LQHAPSVPFQ ERPPDAELLE
401: RDEDQDDRDE RWDPDSDREA DNDSNPVRRR VKSECVEAED KDAESYDKPL DCGRDFLMPF KEISCSKVLG VDSMAVDEPC IKEEQDNLKE LSDHRSR

Best Arabidopsis Sequence Match ( AT3G44680.1 )
(BLAST)

001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS

Arabidopsis Description

HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.