CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER99914	nucleus
EES06194
EES09137
EES09138
EES09141
EES15637
EES16607
OQU78673
OQU78675

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38130.1	EES06194	AT2G45640.1	16429262
AT4G38130.1	EER99914	AT4G32010.1	23362207
AT4G38130.1	EER99914	AT4G32010.1	23362207
AT4G38130.1	EES09137	AT5G01900.1	18776063
AT4G38130.1	EES09138	AT5G01900.1	18776063
AT4G38130.1	EES09141	AT5G01900.1	18776063
AT4G38130.1	EES15637	AT5G01900.1	18776063
AT4G38130.1	EES16607	AT5G01900.1	18776063
AT4G38130.1	OQU78673	AT5G01900.1	18776063
AT4G38130.1	OQU78675	AT5G01900.1	18776063
AT4G38130.1	EES09137	AT5G22570.1	18776063
AT4G38130.1	EES09138	AT5G22570.1	18776063
AT4G38130.1	EES09141	AT5G22570.1	18776063
AT4G38130.1	EES15637	AT5G22570.1	18776063
AT4G38130.1	EES16607	AT5G22570.1	18776063
AT4G38130.1	OQU78673	AT5G22570.1	18776063
AT4G38130.1	OQU78675	AT5G22570.1	18776063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0583400-01	Rice	nucleus	90.73	90.73
TraesCS7B01G261800.1	Wheat	nucleus	88.42	88.25
HORVU7Hr1G085870.2	Barley	nucleus	88.42	88.25
TraesCS7D01G356800.1	Wheat	nucleus	88.22	88.05
Zm00001d046388_P001	Maize	nucleus	90.15	87.95
TraesCS7A01G365600.3	Wheat	nucleus	88.22	87.38
EES04741	Sorghum	nucleus	81.27	81.43
VIT_14s0006g01820.t01	Wine grape	nucleus	77.22	79.68
VIT_03s0038g04240.t01	Wine grape	nucleus	77.22	79.68
Solyc09g091440.2.1	Tomato	nucleus	75.29	78.31
KRH27562	Soybean	nucleus	73.75	76.86
KRH77972	Soybean	nucleus	73.55	76.66
KRH60609	Soybean	nucleus	73.36	76.46
KRH51318	Soybean	nucleus	72.78	75.86
Bra040131.1-P	Field mustard	nucleus	73.36	75.7
CDY30008	Canola	nucleus	73.36	75.7
GSMUA_Achr5P06320_001	Banana	nucleus	67.76	75.65
CDY21119	Canola	nucleus	73.17	75.5
AT4G38130.1	Thale cress	nucleus	72.97	75.45
GSMUA_Achr2P19590_001	Banana	nucleus	66.22	75.38
GSMUA_AchrUn_...	Banana	cytosol	55.98	73.6
PGSC0003DMT400076252	Potato	nucleus	74.71	72.2
GSMUA_Achr8P04190_001	Banana	cytosol, nucleus, plasma membrane	55.6	66.82
GSMUA_Achr1P14440_001	Banana	cytosol	50.97	63.46
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	54.63	61.79
EES10729	Sorghum	cytosol	49.81	60.0
OQU87074	Sorghum	cytosol	42.28	44.51
OQU83122	Sorghum	cytosol	27.61	39.94
KXG29820	Sorghum	cytosol	17.95	26.42
EER89968	Sorghum	plastid	17.18	25.43
EES19606	Sorghum	cytosol	16.8	22.31
EES01710	Sorghum	plastid	14.86	17.91
EER97493	Sorghum	plastid	21.43	15.79
OQU88485	Sorghum	nucleus	16.6	13.67

Protein Annotations

MapMan:12.3.2.1.1	MapMan:12.3.2.4.1	Gene3D:3.40.800.20	EntrezGene:8065038	UniProt:A0A194YJW7	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016569	GO:GO:0016575	GO:GO:0016740	GO:GO:0016747	GO:GO:0016787	GO:GO:0019538
GO:GO:0032041	GO:GO:0046872	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom
InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	EnsemblPlants:KXG20269	ProteinID:KXG20269	ProteinID:KXG20269.2	PFAM:PF00850
PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF127	EnsemblPlantsGene:SORBI_3010G176300
SUPFAM:SSF52768	UniParc:UPI0001A89913	InterPro:Ureohydrolase_dom_sf	RefSeq:XP_002438614.1	:	:

Description

hypothetical protein

Coordinates

chr10:-:51421688..51430413

Molecular Weight (calculated)

57769.7 Da

IEP (calculated)

5.649

GRAVY (calculated)

-0.606

Length

518 amino acids

Sequence
(BLAST)

001: MDASAGGGGN SLPTTGADGS KRRVCYFYDA EVGNYYYGQG HPMKPHRIRM THALLGRYGL LDQMQVLRPH PARDRDLCRF HADDYVAFLR SVTPETQQDQ
101: IRALKRFNVG EDCPVFDGLY SFCQTYAGGS VGGAVKLNHG HDIAINWAGG LHHAKKCEAS GFCYVNDIVL AILELLKYHQ RVLYVDIDIH HGDGVEEAFY
201: TTDRVMTVSF HKFGDYFPGT GDIRDVGHSK GKYYSLNVPL DDGIDDESYQ SLFKPIMGKV MEVFNPGAVV LQCGADSLSG DRLGCFNLSI KGHAECVRFM
301: RSFNVPLLLL GGGGYTIRNV ARCWCYETGV ALGHELTDKM PPNEYYEYFG PDYTLHVAPS NMENKNTRHQ LDDIKSKLLD NLSKLRHAPS VQFQERPPEA
401: ELPEQDEDKE NPDERRDADS DVEMNDAKPL DDYGRRGSIQ NLRMKKESAE TEAVDQDVNS AAAEHSRGTG PVADGVGSSK QTFPNDTTPM SIDEPNVLKV
501: EQQSPNKLQD QPTMHQKP

Best Arabidopsis Sequence Match ( AT4G38130.1 )
(BLAST)

001: MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYATDR
201: VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI DDESYHLLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTETPE
401: VDEDQEDGDK RWDPDSDMDV DDDRKPIPSR VKREAVEPDT KDKDGLKGIM ERGKGCEVEV DESGSTKVTG VNPVGVEEAS VKMEEEGTNK GGAEQAFPPK
501: T

Arabidopsis Description

HDA19Histone deacetylase 19 [Source:UniProtKB/Swiss-Prot;Acc:O22446]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.