Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G01900.1 | EES04741 | AT4G38130.1 | 18776063 |
| AT5G01900.1 | KXG20269 | AT4G38130.1 | 18776063 |
| AT5G22570.1 | EES04741 | AT4G38130.1 | 18776063 |
| AT5G22570.1 | KXG20269 | AT4G38130.1 | 18776063 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d023336_P001 | Maize | nucleus | 59.15 | 48.6 |
| EES16607 | Sorghum | nucleus | 52.34 | 46.07 |
| EES09137 | Sorghum | nucleus | 48.51 | 42.07 |
| Os11t0117400-00 | Rice | nucleus | 39.57 | 34.32 |
| Os12t0116600-01 | Rice | nucleus | 30.21 | 30.74 |
| OQU78675 | Sorghum | nucleus | 18.72 | 20.47 |
| EES09138 | Sorghum | nucleus | 23.83 | 19.38 |
| AT1G80590.1 | Thale cress | nucleus | 17.02 | 17.02 |
| AT1G66600.1 | Thale cress | nucleus | 17.45 | 17.01 |
| EES09141 | Sorghum | nucleus | 18.3 | 15.81 |
| AT1G66560.1 | Thale cress | nucleus | 16.17 | 15.26 |
| Bra020197.1-P | Field mustard | nucleus | 17.45 | 14.64 |
| AT5G01900.1 | Thale cress | nucleus | 16.17 | 14.45 |
| Bra008459.1-P | Field mustard | nucleus | 15.74 | 14.34 |
| CDY09147 | Canola | nucleus | 16.6 | 13.98 |
| CDY71652 | Canola | nucleus | 15.32 | 13.95 |
| AT1G66550.1 | Thale cress | nucleus | 14.89 | 13.78 |
| CDY38684 | Canola | nucleus | 14.89 | 13.57 |
| CDY04820 | Canola | nucleus | 14.89 | 13.41 |
| Bra002421.1-P | Field mustard | nucleus | 16.17 | 13.19 |
| AT5G22570.1 | Thale cress | nucleus | 15.74 | 12.8 |
| CDY26943 | Canola | nucleus | 15.32 | 12.5 |
| Bra028918.1-P | Field mustard | nucleus | 15.32 | 12.41 |
| CDY63078 | Canola | nucleus | 13.62 | 12.4 |
| CDY37613 | Canola | nucleus | 10.21 | 12.12 |
| CDY37614 | Canola | nucleus | 10.21 | 12.12 |
| Bra008454.1-P | Field mustard | nucleus | 10.21 | 12.12 |
| Bra023211.1-P | Field mustard | nucleus | 13.19 | 12.02 |
| CDY12284 | Canola | nucleus | 13.19 | 12.02 |
| Bra020196.1-P | Field mustard | nucleus | 14.47 | 11.97 |
| CDY71866 | Canola | nucleus | 14.47 | 11.97 |
| Bra008456.1-P | Field mustard | nucleus | 12.34 | 11.69 |
| EES15637 | Sorghum | nucleus | 16.6 | 11.44 |
| CDY37611 | Canola | nucleus | 11.91 | 11.29 |
| CDY35701 | Canola | nucleus | 13.62 | 11.23 |
| CDY35694 | Canola | nucleus | 10.21 | 7.87 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | UniProt:A0A1Z5R4H6 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 | EnsemblPlants:OQU78673 | ProteinID:OQU78673 |
| ProteinID:OQU78673.1 | PFAM:PF03106 | PANTHER:PTHR31282 | PANTHER:PTHR31282:SF31 | SMART:SM00774 | EnsemblPlantsGene:SORBI_3008G028800 |
| SUPFAM:SSF118290 | UniParc:UPI0001A884F8 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | RefSeq:XP_002441801.1 | : |
Description
hypothetical protein
Coordinates
chr8:+:2574561..2575647
Molecular Weight (calculated)
26589.2 Da
IEP (calculated)
4.897
GRAVY (calculated)
-0.536
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MSILESSTVG GCQVVINEIE HQRALMRELH DLILPLLDPC SRQEKLAQQL FQDISNSSSK VISFLKLGDN SKKQANLIKY RRKGGKNNEV DSHMLGEEAK
101: EIGNRRRSYY RCANSKDQGC LATKTVQQKE SDGSAGTVRL FDVDYYGQHI CKTDDIIHPY VVETTHYTAP IANHNESSSG STVVHNDVHE IQDESFGNLF
201: MMPSIEEYWT DFTDTEMAGT LDEVTSLMIF EDIWS
101: EIGNRRRSYY RCANSKDQGC LATKTVQQKE SDGSAGTVRL FDVDYYGQHI CKTDDIIHPY VVETTHYTAP IANHNESSSG STVVHNDVHE IQDESFGNLF
201: MMPSIEEYWT DFTDTEMAGT LDEVTSLMIF EDIWS
001: MNSCQQKAME KLLHGHGCAN QLLIMDQTES DSSMEREDLA KSVLHCFSDA LSILIDTNDH QDDQSNNSSP QDSSPVLESS RKPLHKRGRK TSMAESSDYH
101: RHESSTPIYH DGFLWRKYGQ KQIKESEYQR SYYKCAYTKD QNCEAKKQVQ KIQHNPPLYS TTYFGQHICQ LHQAYATFPI DTSDFEEHEG SHMIRFGHPN
201: ISFSSSTSNL RQHQNHQDRI KDEYMKPVIA EDWSPSQWMS SEVALAVEAF EFNPFWTSHD LSS
101: RHESSTPIYH DGFLWRKYGQ KQIKESEYQR SYYKCAYTKD QNCEAKKQVQ KIQHNPPLYS TTYFGQHICQ LHQAYATFPI DTSDFEEHEG SHMIRFGHPN
201: ISFSSSTSNL RQHQNHQDRI KDEYMKPVIA EDWSPSQWMS SEVALAVEAF EFNPFWTSHD LSS
Arabidopsis Description
WRKY62WRKY62 [Source:UniProtKB/TrEMBL;Acc:A0A178U8T9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.