Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G22570.1 | CDY21119 | AT4G38130.1 | 18776063 |
| AT5G22570.1 | CDY30008 | AT4G38130.1 | 18776063 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002421.1-P | Field mustard | nucleus | 82.29 | 82.29 |
| CDY71866 | Canola | nucleus | 55.9 | 56.69 |
| AT5G22570.1 | Thale cress | nucleus | 52.43 | 52.25 |
| CDY35694 | Canola | nucleus | 53.82 | 50.82 |
| CDY09147 | Canola | nucleus | 48.61 | 50.18 |
| CDY35701 | Canola | nucleus | 45.83 | 46.32 |
| HORVU2Hr1G098280.1 | Barley | nucleus | 5.56 | 35.56 |
| CDY04820 | Canola | nucleus | 28.47 | 31.42 |
| CDY12284 | Canola | nucleus | 27.78 | 31.01 |
| CDY63078 | Canola | nucleus | 27.78 | 31.01 |
| CDY38684 | Canola | nucleus | 24.65 | 27.52 |
| CDY71652 | Canola | nucleus | 24.65 | 27.52 |
| CDY37614 | Canola | nucleus | 18.75 | 27.27 |
| CDY37613 | Canola | nucleus | 18.75 | 27.27 |
| CDY37611 | Canola | nucleus | 21.53 | 25.0 |
| HORVU2Hr1G003310.1 | Barley | nucleus | 6.25 | 24.66 |
| OQU78675 | Sorghum | nucleus | 17.01 | 22.79 |
| Os12t0116600-01 | Rice | nucleus | 17.01 | 21.21 |
| Os11t0117400-00 | Rice | nucleus | 19.1 | 20.3 |
| TraesCS2A01G021400.1 | Wheat | nucleus | 9.03 | 19.12 |
| Os12t0116700-01 | Rice | nucleus | 21.18 | 19.0 |
| TraesCS2A01G019300.1 | Wheat | nucleus | 16.32 | 18.73 |
| TraesCS5A01G146700.1 | Wheat | nucleus | 20.49 | 18.61 |
| Os11t0117500-01 | Rice | nucleus | 20.49 | 18.44 |
| TraesCS5A01G146600.1 | Wheat | nucleus | 17.01 | 18.28 |
| TraesCS5B01G145400.1 | Wheat | nucleus | 16.67 | 18.25 |
| TraesCS2D01G051000.1 | Wheat | nucleus | 15.62 | 18.22 |
| TraesCS5B01G145500.1 | Wheat | nucleus | 19.79 | 18.04 |
| EES09138 | Sorghum | nucleus | 18.06 | 17.99 |
| TraesCS5D01G145700.1 | Wheat | nucleus | 16.32 | 17.8 |
| TraesCS5D01G145600.1 | Wheat | nucleus | 19.44 | 17.72 |
| TraesCS2A01G052100.1 | Wheat | nucleus | 15.62 | 17.72 |
| HORVU5Hr1G046430.1 | Barley | nucleus | 19.44 | 17.18 |
| EES09141 | Sorghum | nucleus | 15.97 | 16.91 |
| EES16607 | Sorghum | nucleus | 15.28 | 16.48 |
| Zm00001d005056_P001 | Maize | nucleus | 16.67 | 15.95 |
| EES09137 | Sorghum | nucleus | 14.93 | 15.87 |
| Zm00001d052358_P001 | Maize | nucleus | 16.32 | 15.41 |
| Zm00001d023336_P001 | Maize | nucleus | 15.28 | 15.38 |
| OQU78673 | Sorghum | nucleus | 12.5 | 15.32 |
| Zm00001d044682_P001 | Maize | plastid | 12.85 | 14.57 |
| Zm00001d023332_P001 | Maize | nucleus | 16.32 | 14.51 |
| Os11t0117600-00 | Rice | nucleus | 7.64 | 14.29 |
| TraesCS5A01G146500.1 | Wheat | nucleus | 14.93 | 12.72 |
| EES15637 | Sorghum | nucleus | 14.24 | 12.02 |
| TraesCS5D01G145800.1 | Wheat | nucleus | 13.89 | 11.98 |
| Zm00001d044680_P001 | Maize | nucleus | 14.93 | 11.91 |
| TraesCS5B01G145300.1 | Wheat | nucleus | 13.89 | 11.87 |
| TraesCS2D01G051500.1 | Wheat | cytosol | 7.64 | 11.4 |
| HORVU5Hr1G046390.2 | Barley | nucleus, plastid | 13.89 | 10.72 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:A0A078GQM0 | UniProt:A0A078GQM0 | EnsemblPlants:CDY26943 | ProteinID:CDY26943 |
| ProteinID:CDY26943.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00036681001 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31282 |
| PANTHER:PTHR31282:SF37 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0004EBB574 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaC09g36400DBnaC09g36400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQM0]
Coordinates
chrLK032197:-:146227..147629
Molecular Weight (calculated)
32974.9 Da
IEP (calculated)
6.104
GRAVY (calculated)
-0.908
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSPHEKVVQ AILYGHSCAK RLKLWLEDPM ADDRSVSSYD LAKSIVHCFS NAISILSDQP KSEDDQVSDL SSMDSSPPLP HSKRRKINST NSTKNWRDDS
101: PDPYNDGFLW RKYGQKSIKN SKYERSYYRC SYHIDHDCGA RKHEQQIKEN PPVYRTTYFG HHTCKINHNH DAVFTAVQDQ VDDAGSCRII RFGKELDQEK
201: GSHSTGFSLS VKHEESIIKE ETCTDQYRGI TGDDKDCQHV MEENQSSLSS SYTPPLSSVS ETDMFDSDLL LNNLDSWDRY GLFDFGVH
101: PDPYNDGFLW RKYGQKSIKN SKYERSYYRC SYHIDHDCGA RKHEQQIKEN PPVYRTTYFG HHTCKINHNH DAVFTAVQDQ VDDAGSCRII RFGKELDQEK
201: GSHSTGFSLS VKHEESIIKE ETCTDQYRGI TGDDKDCQHV MEENQSSLSS SYTPPLSSVS ETDMFDSDLL LNNLDSWDRY GLFDFGVH
001: MEMNSPHEKA VQAIRYGHSC AMRLKRRLNH PMADGGPLSS YDLAKSIVES FSNAISILSA KPETEDDQFS DLSSRDSSPP PQGSPSKKRK IDSTNSSENW
101: RDDSPDPIYY DGYLWRKYGQ KSIKKSNHQR SYYRCSYNKD HNCEARKHEQ KIKDNPPVYR TTYFGHHTCK TEHNLDAIFI AGQDPLDDFK STQMIRFGKD
201: QDQEKESRSN GFSLSVKHEE DIIKEQAIDQ YREITSNDQD CQDVIEEYLS SPSGSYPPSS SSGSESADFN SDLLFDNPDS WDRYDQFYF
101: RDDSPDPIYY DGYLWRKYGQ KSIKKSNHQR SYYRCSYNKD HNCEARKHEQ KIKDNPPVYR TTYFGHHTCK TEHNLDAIFI AGQDPLDDFK STQMIRFGKD
201: QDQEKESRSN GFSLSVKHEE DIIKEQAIDQ YREITSNDQD CQDVIEEYLS SPSGSYPPSS SSGSESADFN SDLLFDNPDS WDRYDQFYF
Arabidopsis Description
WRKY38Probable WRKY transcription factor 38 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWF1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.