Factsheet for TraesCS5D01G145700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G184100.2
TraesCS6B01G212600.3
TraesCS6D01G171000.1
TraesCS7A01G365600.3
TraesCS7B01G261800.1
TraesCS7D01G356800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01900.1	TraesCS6A01G184100.2	AT4G38130.1	18776063
AT5G01900.1	TraesCS6B01G212600.3	AT4G38130.1	18776063
AT5G01900.1	TraesCS6D01G171000.1	AT4G38130.1	18776063
AT5G01900.1	TraesCS7A01G365600.3	AT4G38130.1	18776063
AT5G01900.1	TraesCS7B01G261800.1	AT4G38130.1	18776063
AT5G01900.1	TraesCS7D01G356800.1	AT4G38130.1	18776063
AT5G22570.1	TraesCS6A01G184100.2	AT4G38130.1	18776063
AT5G22570.1	TraesCS6B01G212600.3	AT4G38130.1	18776063
AT5G22570.1	TraesCS6D01G171000.1	AT4G38130.1	18776063
AT5G22570.1	TraesCS7A01G365600.3	AT4G38130.1	18776063
AT5G22570.1	TraesCS7B01G261800.1	AT4G38130.1	18776063
AT5G22570.1	TraesCS7D01G356800.1	AT4G38130.1	18776063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G146600.1	Wheat	nucleus	69.32	68.28
TraesCS5B01G145400.1	Wheat	nucleus	60.98	61.22
TraesCS2D01G051000.1	Wheat	nucleus	38.64	41.3
EES09141	Sorghum	nucleus	40.91	39.71
Zm00001d005056_P001	Maize	nucleus	35.98	31.56
TraesCS5D01G145600.1	Wheat	nucleus	31.82	26.58
TraesCS2D01G051500.1	Wheat	cytosol	15.53	21.24
AT1G80590.1	Thale cress	nucleus	18.18	20.43
CDY37613	Canola	nucleus	15.15	20.2
CDY37614	Canola	nucleus	15.15	20.2
Bra008454.1-P	Field mustard	nucleus	15.15	20.2
AT1G66600.1	Thale cress	nucleus	17.42	19.09
Bra023211.1-P	Field mustard	nucleus	18.56	18.99
CDY63078	Canola	nucleus	18.56	18.99
CDY12284	Canola	nucleus	18.56	18.99
AT5G01900.1	Thale cress	nucleus	18.18	18.25
AT1G66550.1	Thale cress	nucleus	17.42	18.11
AT1G66560.1	Thale cress	nucleus	17.05	18.07
CDY04820	Canola	nucleus	17.8	18.01
TraesCS5D01G145800.1	Wheat	nucleus	22.73	17.96
CDY38684	Canola	nucleus	17.42	17.83
CDY71652	Canola	nucleus	17.42	17.83
Bra008459.1-P	Field mustard	nucleus	17.42	17.83
Bra020197.1-P	Field mustard	nucleus	17.8	16.79
Bra028918.1-P	Field mustard	nucleus	18.18	16.55
CDY09147	Canola	nucleus	17.42	16.49
CDY26943	Canola	nucleus	17.8	16.32
AT5G22570.1	Thale cress	nucleus	17.8	16.26
CDY71866	Canola	nucleus	17.42	16.2
Bra020196.1-P	Field mustard	nucleus	17.42	16.2
CDY37611	Canola	nucleus	14.77	15.73
Bra002421.1-P	Field mustard	nucleus	17.05	15.62
Bra008456.1-P	Field mustard	nucleus	14.39	15.32
CDY35701	Canola	nucleus	16.29	15.09
CDY35694	Canola	nucleus	15.15	13.11

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF25	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:TraesCS5D01G145700
EnsemblPlants:TraesCS5D01G145700.1	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr5D:-:232417298..232418622

Molecular Weight (calculated)

29702.7 Da

IEP (calculated)

6.101

GRAVY (calculated)

-0.662

Length

264 amino acids

Sequence
(BLAST)

001: MDHSKNRDHG LAEIEALLRR EQELVTQLRA LILPQLHNVD SGSAELAVQL FDDAIRCTTS VVSKLFTAGS GATIELIDDK SLVRKNSTGT TATAIDDKMD
101: EQAKPSCIVG RKRRRNDGKR SRSLVTNVPH YDGHQWRKYG QKNINGRQHA RSYYRCTYTE RNCSATKTVQ QQDQDGGSSI YSADAGEDQG AKYTVVYYGD
201: HTCKASDNIS NNIIDHLPNL VDIDLRRGET ERVTLEIPEF EMELDVPALL EVFNNSQLNW EIVC

Best Arabidopsis Sequence Match ( AT1G66550.2 )
(BLAST)

001: MVSNIDHKAM EALLRGQGCA NNLKILLENG EISSVSTEPL IHTILDSFSL ALSFMDSPNH PPYHESSSHN MASHMSRRSS KQKLCVAEGL VNYNHDSRTM
101: CPNDGFTWRK YGQKTIKASA HKRCYYRCTY AKDQNCNATK RVQKIKDNPP VYRTTYLGKH VCKAFAVHDD TYSSTMIRFD QVVPEPIMPQ LTTIDHQVIT
201: VEENSAEHIM NQECDINDYL VDDDPFWASQ FPPFPSSDTM FLENISAFD

Arabidopsis Description

WRKY67Probable WRKY transcription factor 67 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.