Factsheet for TraesCS2D01G051000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G184100.2
TraesCS6B01G212600.3
TraesCS6D01G171000.1
TraesCS7A01G365600.3
TraesCS7B01G261800.1
TraesCS7D01G356800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01900.1	TraesCS6A01G184100.2	AT4G38130.1	18776063
AT5G01900.1	TraesCS6B01G212600.3	AT4G38130.1	18776063
AT5G01900.1	TraesCS6D01G171000.1	AT4G38130.1	18776063
AT5G01900.1	TraesCS7A01G365600.3	AT4G38130.1	18776063
AT5G01900.1	TraesCS7B01G261800.1	AT4G38130.1	18776063
AT5G01900.1	TraesCS7D01G356800.1	AT4G38130.1	18776063
AT5G22570.1	TraesCS6A01G184100.2	AT4G38130.1	18776063
AT5G22570.1	TraesCS6B01G212600.3	AT4G38130.1	18776063
AT5G22570.1	TraesCS6D01G171000.1	AT4G38130.1	18776063
AT5G22570.1	TraesCS7A01G365600.3	AT4G38130.1	18776063
AT5G22570.1	TraesCS7B01G261800.1	AT4G38130.1	18776063
AT5G22570.1	TraesCS7D01G356800.1	AT4G38130.1	18776063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G098280.1	Barley	nucleus	12.96	71.11
HORVU2Hr1G003310.1	Barley	nucleus	15.38	52.05
TraesCS2D01G051500.1	Wheat	cytosol	34.82	44.56
EES09141	Sorghum	nucleus	44.53	40.44
TraesCS5D01G145700.1	Wheat	nucleus	41.3	38.64
Zm00001d005056_P001	Maize	nucleus	41.7	34.22
TraesCS5D01G145600.1	Wheat	nucleus	31.58	24.68
CDY37614	Canola	nucleus	16.6	20.71
Bra008454.1-P	Field mustard	nucleus	16.6	20.71
CDY37613	Canola	nucleus	16.6	20.71
AT1G66600.1	Thale cress	nucleus	17.81	18.26
CDY71652	Canola	nucleus	19.03	18.22
CDY38684	Canola	nucleus	19.03	18.22
Bra008459.1-P	Field mustard	nucleus	19.03	18.22
AT1G80590.1	Thale cress	nucleus	17.0	17.87
CDY04820	Canola	nucleus	18.22	17.24
CDY12284	Canola	nucleus	17.81	17.05
Bra023211.1-P	Field mustard	nucleus	17.81	17.05
CDY63078	Canola	nucleus	17.81	17.05
TraesCS5D01G145800.1	Wheat	nucleus	22.67	16.77
Bra028918.1-P	Field mustard	nucleus	19.03	16.21
Bra020196.1-P	Field mustard	nucleus	18.62	16.2
CDY71866	Canola	nucleus	18.62	16.2
CDY09147	Canola	nucleus	18.22	16.13
Bra020197.1-P	Field mustard	nucleus	18.22	16.07
AT1G66560.1	Thale cress	nucleus	16.19	16.06
AT5G01900.1	Thale cress	nucleus	17.0	15.97
AT1G66550.1	Thale cress	nucleus	16.19	15.75
CDY37611	Canola	nucleus	15.79	15.73
Bra008456.1-P	Field mustard	nucleus	15.79	15.73
CDY26943	Canola	nucleus	18.22	15.62
Bra002421.1-P	Field mustard	nucleus	18.22	15.62
CDY35701	Canola	nucleus	17.81	15.44
AT5G22570.1	Thale cress	nucleus	17.0	14.53
CDY35694	Canola	nucleus	14.98	12.13

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31282	PANTHER:PTHR31282:SF25	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:TraesCS2D01G051000	EnsemblPlants:TraesCS2D01G051000.1
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2D:-:19239270..19241048

Molecular Weight (calculated)

27837.0 Da

IEP (calculated)

7.501

GRAVY (calculated)

-0.640

Length

247 amino acids

Sequence
(BLAST)

001: MKSSSTMVVN GGSEMDALFL LRRQQELLRQ LRALILPALR DADGRSADLA ISLFDDVIDC IAGVMSRLEG ISTQAGGRRA GVDVITPNAG ERQEEKPMIS
101: NVGQKRRRNN DKRSRSLITV VPHYDGHHWR KYGQKNINGR EHTRSYYRCA YTERNCPATK TIQQQDHNIT INCEEKTAKY IVVYYGHHTC CDDNTRNGAK
201: NDPGMDLIQN GKMAGAVTEF QKFDPGDVDM PALIEVLDNP ELNWDII

Best Arabidopsis Sequence Match ( AT5G22570.1 )
(BLAST)

001: MEMNSPHEKA VQAIRYGHSC AMRLKRRLNH PMADGGPLSS YDLAKSIVES FSNAISILSA KPETEDDQFS DLSSRDSSPP PQGSPSKKRK IDSTNSSENW
101: RDDSPDPIYY DGYLWRKYGQ KSIKKSNHQR SYYRCSYNKD HNCEARKHEQ KIKDNPPVYR TTYFGHHTCK TEHNLDAIFI AGQDPLDDFK STQMIRFGKD
201: QDQEKESRSN GFSLSVKHEE DIIKEQAIDQ YREITSNDQD CQDVIEEYLS SPSGSYPPSS SSGSESADFN SDLLFDNPDS WDRYDQFYF

Arabidopsis Description

WRKY38Probable WRKY transcription factor 38 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWF1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.