Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G356800.1 | Wheat | nucleus | 98.47 | 99.23 |
| HORVU7Hr1G085870.2 | Barley | nucleus | 96.94 | 97.69 |
| TraesCS7B01G261800.1 | Wheat | nucleus | 96.75 | 97.5 |
| Os06t0583400-01 | Rice | nucleus | 88.91 | 89.77 |
| KXG20269 | Sorghum | nucleus | 87.38 | 88.22 |
| Zm00001d046388_P001 | Maize | nucleus | 83.75 | 82.49 |
| TraesCS6A01G184100.2 | Wheat | nucleus | 81.07 | 81.7 |
| VIT_14s0006g01820.t01 | Wine grape | nucleus | 76.29 | 79.48 |
| VIT_03s0038g04240.t01 | Wine grape | nucleus | 75.72 | 78.88 |
| AT4G38130.1 | Thale cress | nucleus | 74.57 | 77.84 |
| Solyc09g091440.2.1 | Tomato | nucleus | 73.42 | 77.11 |
| Bra040131.1-P | Field mustard | nucleus | 73.81 | 76.89 |
| CDY30008 | Canola | nucleus | 73.81 | 76.89 |
| CDY21119 | Canola | nucleus | 73.61 | 76.69 |
| KRH27562 | Soybean | nucleus | 72.66 | 76.46 |
| KRH77972 | Soybean | nucleus | 72.47 | 76.26 |
| KRH60609 | Soybean | nucleus | 71.89 | 75.65 |
| KRH51318 | Soybean | nucleus | 71.51 | 75.25 |
| GSMUA_Achr2P19590_001 | Banana | nucleus | 65.39 | 75.16 |
| GSMUA_Achr5P06320_001 | Banana | nucleus | 66.54 | 75.0 |
| PGSC0003DMT400076252 | Potato | nucleus | 73.61 | 71.83 |
| GSMUA_AchrUn_... | Banana | cytosol | 54.11 | 71.83 |
| GSMUA_Achr8P04190_001 | Banana | cytosol, nucleus, plasma membrane | 53.35 | 64.73 |
| GSMUA_Achr1P14440_001 | Banana | cytosol | 48.57 | 61.06 |
| TraesCS6A01G181100.1 | Wheat | cytosol | 53.15 | 60.7 |
| TraesCS2A01G293200.1 | Wheat | cytosol | 48.76 | 59.3 |
| TraesCS5A01G295000.1 | Wheat | cytosol | 43.02 | 46.49 |
| TraesCS4A01G213200.1 | Wheat | cytosol, mitochondrion, nucleus | 40.92 | 45.44 |
| TraesCS7A01G362600.1 | Wheat | plastid | 17.59 | 25.92 |
| TraesCS1A01G317100.1 | Wheat | mitochondrion | 16.83 | 22.17 |
| TraesCS1A01G275300.1 | Wheat | cytosol, nucleus, plastid | 16.25 | 21.74 |
| TraesCS5A01G119300.2 | Wheat | mitochondrion | 14.91 | 17.57 |
| TraesCS2A01G177100.1 | Wheat | cytosol | 21.22 | 16.02 |
| TraesCS5A01G065300.1 | Wheat | nucleus | 17.78 | 15.15 |
Protein Annotations
| MapMan:12.3.2.1.1 | MapMan:12.3.2.4.1 | Gene3D:3.40.800.20 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016575 |
| GO:GO:0016787 | GO:GO:0019538 | InterPro:His_deacetylse | InterPro:His_deacetylse_1 | InterPro:His_deacetylse_dom | InterPro:His_deacetylse_dom_sf |
| InterPro:IPR037138 | PFAM:PF00850 | PIRSF:PIRSF037913 | PRINTS:PR01270 | PRINTS:PR01271 | PANTHER:PTHR10625 |
| PANTHER:PTHR10625:SF127 | SUPFAM:SSF52768 | EnsemblPlantsGene:TraesCS7A01G365600 | EnsemblPlants:TraesCS7A01G365600.3 | InterPro:Ureohydrolase_dom_sf | : |
Description
No Description!
Coordinates
chr7A:-:539544474..539554069
Molecular Weight (calculated)
58407.5 Da
IEP (calculated)
5.624
GRAVY (calculated)
-0.579
Length
523 amino acids
Sequence
(BLAST)
(BLAST)
001: MDISAGGGGN SLPTTGADGS KRRVCYFYDA EVGNYYYGQG HPMKPHRIRM THALLAHYGL LDEMQVLKPH PARDRDLCRF HADDYVSFLR SVTPETQQDQ
101: IRALKRFNVG EDCPVFDGLY SFCQTYAGGS VGGAVKLNHG HDIAINWAGG LHHAKKCEAS GFCYVNDIVL AILELLKYHQ RVLYVDIDIH HGDGVEEAFY
201: TTDRVMTVSF HKFGDYFPGT GDIRDVGHSK GKYYSLNVPL DDGIDDESYQ SLFKPIMGKV MEIFRPGAVV LQCGADSLSG DRLGCFNLSI KGHAECVRFM
301: RSFNVPVLLL GGGGYTIRNV ARCWCYETGV ALGHELTDKM PLNEYYEYFG PDYTLHVAPS NMENKNTHRH LDEIRSRLLE NLTKLRHAPS VQFQERPPEA
401: EQPEVIFRQD EDQENPDERH HADSDVEMDD AKPLEDSERR TSTQGARVKR ESAETEVTTD QDGNGVASEQ VRGPEPVADG VGSSKQNPPI DASPMAIDGP
501: AVVRAEPERS NKLQEQQALH QKP
101: IRALKRFNVG EDCPVFDGLY SFCQTYAGGS VGGAVKLNHG HDIAINWAGG LHHAKKCEAS GFCYVNDIVL AILELLKYHQ RVLYVDIDIH HGDGVEEAFY
201: TTDRVMTVSF HKFGDYFPGT GDIRDVGHSK GKYYSLNVPL DDGIDDESYQ SLFKPIMGKV MEIFRPGAVV LQCGADSLSG DRLGCFNLSI KGHAECVRFM
301: RSFNVPVLLL GGGGYTIRNV ARCWCYETGV ALGHELTDKM PLNEYYEYFG PDYTLHVAPS NMENKNTHRH LDEIRSRLLE NLTKLRHAPS VQFQERPPEA
401: EQPEVIFRQD EDQENPDERH HADSDVEMDD AKPLEDSERR TSTQGARVKR ESAETEVTTD QDGNGVASEQ VRGPEPVADG VGSSKQNPPI DASPMAIDGP
501: AVVRAEPERS NKLQEQQALH QKP
001: MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYATDR
201: VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI DDESYHLLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTETPE
401: VDEDQEDGDK RWDPDSDMDV DDDRKPIPSR VKREAVEPDT KDKDGLKGIM ERGKGCEVEV DESGSTKVTG VNPVGVEEAS VKMEEEGTNK GGAEQAFPPK
501: T
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYATDR
201: VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI DDESYHLLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTETPE
401: VDEDQEDGDK RWDPDSDMDV DDDRKPIPSR VKREAVEPDT KDKDGLKGIM ERGKGCEVEV DESGSTKVTG VNPVGVEEAS VKMEEEGTNK GGAEQAFPPK
501: T
Arabidopsis Description
HDA19Histone deacetylase 19 [Source:UniProtKB/Swiss-Prot;Acc:O22446]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.