Factsheet for VIT_03s0038g04240.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0058g01300.t01	nucleus
VIT_15s0048g01290.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38130.1	VIT_15s0048g01290.t01	AT2G45640.1	16429262
AT4G38130.1	VIT_08s0058g01300.t01	AT4G32010.1	23362207
AT4G38130.1	VIT_08s0058g01300.t01	AT4G32010.1	23362207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0006g01820.t01	Wine grape	nucleus	95.02	95.02
KRH60609	Soybean	nucleus	84.86	85.71
KRH51318	Soybean	nucleus	84.26	85.11
Bra040131.1-P	Field mustard	nucleus	84.26	84.26
CDY21119	Canola	nucleus	84.06	84.06
CDY30008	Canola	nucleus	83.86	83.86
Solyc09g091440.2.1	Tomato	nucleus	83.07	83.73
AT4G38130.1	Thale cress	nucleus	83.27	83.43
Zm00001d016381_P001	Maize	nucleus	67.13	82.6
PGSC0003DMT400076252	Potato	nucleus	82.87	77.61
Os06t0583400-01	Rice	nucleus	80.08	77.61
Zm00001d053595_P004	Maize	nucleus	79.88	77.56
EES04741	Sorghum	nucleus	79.88	77.56
GSMUA_Achr5P06320_001	Banana	nucleus	71.51	77.37
KXG20269	Sorghum	nucleus	79.68	77.22
GSMUA_Achr2P19590_001	Banana	nucleus	69.72	76.92
HORVU6Hr1G038710.1	Barley	cytosol	79.28	76.83
TraesCS6B01G212600.3	Wheat	nucleus	79.48	76.73
TraesCS6A01G184100.2	Wheat	nucleus	79.28	76.69
TraesCS7D01G356800.1	Wheat	nucleus	79.08	76.49
HORVU7Hr1G085870.2	Barley	nucleus	78.88	76.3
TraesCS7B01G261800.1	Wheat	nucleus	78.49	75.92
TraesCS7A01G365600.3	Wheat	nucleus	78.88	75.72
Zm00001d014076_P001	Maize	cytosol, mitochondrion, nucleus	14.34	74.23
GSMUA_AchrUn_...	Banana	cytosol	57.97	73.86
Zm00001d046388_P001	Maize	nucleus	75.9	71.75
Os02t0215200-02	Rice	cytoskeleton, cytosol, nucleus	72.11	71.12
Os02t0214900-01	Rice	cytoskeleton, cytosol, nucleus	70.92	69.8
TraesCS6D01G171000.1	Wheat	golgi	79.28	69.34
GSMUA_Achr8P04190_001	Banana	cytosol, nucleus, plasma membrane	58.17	67.75
VIT_17s0000g09070.t01	Wine grape	cytosol	60.16	65.09
GSMUA_Achr1P14440_001	Banana	cytosol	52.79	63.7
VIT_06s0061g01510.t01	Wine grape	cytosol, mitochondrion, nucleus	49.6	57.91
VIT_15s0021g00610.t01	Wine grape	cytosol	49.0	57.21
Zm00001d039202_P001	Maize	nucleus	17.53	53.01
Zm00001d018346_P001	Maize	mitochondrion	21.71	49.32
VIT_04s0008g00910.t01	Wine grape	plastid	17.33	24.23
VIT_06s0080g00210.t01	Wine grape	nucleus	15.34	22.13
VIT_04s0044g01510.t01	Wine grape	mitochondrion	14.94	17.16
VIT_17s0000g07280.t01	Wine grape	cytosol	21.12	16.41
VIT_17s0000g04120.t01	Wine grape	nucleus	18.53	13.34
VIT_13s0106g00170.t01	Wine grape	cytosol, golgi, plastid	8.17	12.17

Protein Annotations

EntrezGene:100241833	wikigene:100241833	MapMan:12.3.2.1.1	MapMan:12.3.2.4.1	Gene3D:3.40.800.20	ProteinID:CCB60502
ProteinID:CCB60502.1	UniProt:F6I0N6	EMBL:FN596508	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787
GO:GO:0019538	GO:GO:0032041	GO:GO:0046872	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_1
InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	EntrezGene:LOC100241833	wikigene:LOC100241833	PFAM:PF00850
PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF178	SUPFAM:SSF52768
TIGR:TC62077	UniParc:UPI0001982F98	InterPro:Ureohydrolase_dom_sf	ArrayExpress:VIT_03s0038g04240	EnsemblPlantsGene:VIT_03s0038g04240	EnsemblPlants:VIT_03s0038g04240.t01
unigene:Vvi.11579	RefSeq:XP_002283371	RefSeq:XP_002283371.1	RefSeq:XP_019074583.1	RefSeq:XP_019074584.1	SEG:seg

Description

Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F6I0N6]

Coordinates

chr3:+:3062180..3067699

Molecular Weight (calculated)

56552.6 Da

IEP (calculated)

5.040

GRAVY (calculated)

-0.528

Length

502 amino acids

Sequence
(BLAST)

001: MDTGGNSLPS GADGVKRKVS YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPFPARDR DLCRFHADDY VSFLRGITPE TQQDQLRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGAV KLNHGLCDIA VNWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYTTDR
201: VMTVSFHKFG DYFPGTGDIR DIGFGKGKYY SLNVPLDDGI DDESYHFLFK PIIGKVMEVF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVRYMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGI EVDDKMPQHE YYEYFGPDYT LHVAPSNMEN KNSHQILDEI RAKLLDNLSK LRHAPSVQFQ ERPPDTELPE
401: ADEDHDDGDE RWDPESDMEV DEEHKPLPSR VKREIVEPEA KDSDDKKGVA EHSRGFDTAA EETACSKASD VCPMPIDEPN VKVEQENLNK PFDQPVQMYP
501: KP

Best Arabidopsis Sequence Match ( AT4G38130.1 )
(BLAST)

001: MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYATDR
201: VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI DDESYHLLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTETPE
401: VDEDQEDGDK RWDPDSDMDV DDDRKPIPSR VKREAVEPDT KDKDGLKGIM ERGKGCEVEV DESGSTKVTG VNPVGVEEAS VKMEEEGTNK GGAEQAFPPK
501: T

Arabidopsis Description

HDA19Histone deacetylase 19 [Source:UniProtKB/Swiss-Prot;Acc:O22446]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.