Factsheet for VIT_17s0000g07280.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56821	Soybean	nucleus	69.04	67.99
KRH03123	Soybean	cytosol	67.03	66.01
CDY23088	Canola	nucleus	65.63	65.53
Solyc03g115150.2.1	Tomato	cytosol	64.71	64.61
CDY02173	Canola	nucleus	65.02	64.52
Bra012984.1-P	Field mustard	nucleus	64.55	64.45
AT5G61060.2	Thale cress	cytosol	65.33	63.55
Bra035942.1-P	Field mustard	peroxisome	63.16	62.77
CDY16823	Canola	peroxisome	63.0	62.62
GSMUA_Achr4P03250_001	Banana	cytosol	63.62	61.9
CDX87200	Canola	peroxisome	62.54	61.68
TraesCS1A01G317100.1	Wheat	mitochondrion	36.07	58.69
TraesCS1B01G329500.1	Wheat	cytosol	35.29	58.46
TraesCS1D01G317100.1	Wheat	mitochondrion	35.29	57.87
Os07t0602200-01	Rice	cytosol, nucleus, plastid	60.68	56.4
TraesCS2A01G177100.1	Wheat	cytosol	59.13	55.12
EER97493	Sorghum	plastid	59.75	54.91
TraesCS2B01G204100.1	Wheat	cytosol	58.51	54.55
TraesCS2D01G185200.1	Wheat	cytosol, golgi	58.51	54.55
Bra029339.1-P	Field mustard	cytosol	39.94	53.64
Zm00001d006780_P011	Maize	cytosol	58.36	53.55
HORVU1Hr1G066760.1	Barley	plastid	36.22	53.42
HORVU2Hr1G032540.2	Barley	plastid	59.29	52.25
CDY42846	Canola	nucleus	41.02	51.26
CDY47012	Canola	cytosol	29.41	44.39
AT5G61070.1	Thale cress	cytosol	46.59	44.13
VIT_06s0080g00210.t01	Wine grape	nucleus	15.02	27.87
VIT_04s0044g01510.t01	Wine grape	mitochondrion	16.72	24.71
VIT_17s0000g04120.t01	Wine grape	nucleus	25.39	23.53
VIT_17s0000g09070.t01	Wine grape	cytosol	15.33	21.34
VIT_14s0006g01820.t01	Wine grape	nucleus	16.56	21.31
VIT_03s0038g04240.t01	Wine grape	nucleus	16.41	21.12
VIT_15s0021g00610.t01	Wine grape	cytosol	13.93	20.93
VIT_06s0061g01510.t01	Wine grape	cytosol, mitochondrion, nucleus	13.78	20.7
VIT_04s0008g00910.t01	Wine grape	plastid	10.84	19.5
VIT_13s0106g00170.t01	Wine grape	cytosol, golgi, plastid	9.13	17.51

Protein Annotations

EntrezGene:100250074	wikigene:100250074	MapMan:12.3.2.1.2	Gene3D:3.10.490.10	Gene3D:3.40.800.20	ProteinID:CBI15124
ProteinID:CBI15124.3	UniProt:D7SI14	EMBL:FN594950	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325
GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538
GO:GO:0032041	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138
EntrezGene:LOC100250074	wikigene:LOC100250074	PFAM:PF00850	PRINTS:PR01270	PANTHER:PTHR10625	PANTHER:PTHR10625:SF177
SUPFAM:SSF52768	TIGR:TC61775	UniParc:UPI0001BE0AF6	InterPro:Ureohydrolase_dom_sf	ArrayExpress:VIT_17s0000g07280	EnsemblPlantsGene:VIT_17s0000g07280
EnsemblPlants:VIT_17s0000g07280.t01	unigene:Vvi.22387	RefSeq:XP_002280859	RefSeq:XP_002280859.2	SEG:seg	:

Description

Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:D7SI14]

Coordinates

chr17:+:8144977..8155954

Molecular Weight (calculated)

72072.2 Da

IEP (calculated)

4.915

GRAVY (calculated)

-0.290

Length

646 amino acids

Sequence
(BLAST)

001: MEVNSEKGDR RRRVGLVYDD RMCEHATADG DPHPENPDRI RAIWKKLESA GIPQRCVVFN AKEAEDKHIL SVHSNNHVNL IKNISSKQFD SRRNRIASKF
101: NSIYMNEGSS EAAYLAAGSV IEVAERVAKG ELSSAFAIVR PPGHHAEQNE PMGFCLYNNV AIATSFLLNE RPDIKKILIV DWDVHHGNGT QKMFWKDPRV
201: LFFSVHRHEF GSFYPANDEG FYAMTGEGPG AGYNINVPWE NGRCGDADYL AVWDHILIPV AKDFNPDIVI ISAGFDAAIG DPLGGCHVTP YGYSVMLKKL
301: MEFSEGKIIM ALEGGYNLVS LANSVLACVE VLLEDKPIAG SSEAYPFEST WRVIQAVRQE LSAFWPTLAD ELPKKLTSCK ASPLQLLVAS SDSEDESDID
401: LHIRAENLEA VVQDGLSKLK VDEDSHDLVA TWRSELSKID VWYASFGSNM WKSRFLCYIE GGQLEGMEKR CSGSVDRNPP KEIMWKTVPH RLFFGRDHSS
501: TWGPGGVAFL NPEENNQDRA YICLYRITLE QFNDVLLQEN ASSYDISSPL FDLVALNSIA DKQSISVEFK SGWYRSVLYL GKECDIPILT LTCPLSDVEA
601: FKSGDLPMSA PSKEYANTII RGLTEGKQLS EEEAIAYIQE ASTKPL

Best Arabidopsis Sequence Match ( AT5G61060.1 )
(BLAST)

001: MAMAGESSGK KIGDCDGKVA GNRQRKVGLI YDETMCKHDT PDGEDHPECP DRIRVIWEKL QLAGVSQRCV VLGSSKAEDK HLQLVHTKDH VNLVKSISTK
101: QKDYRRNRIA SQLNSIYLNG GSSEAAYLAA GSVVKLAEKV AEGELDCGFA IVRPPGHHAE ADEAMGFCLF NNVAVAASFL LNERPDLGVK KILIVDWDVH
201: HGNGTQKMFW KDPRVLFFSV HRHEYGGFYP AGDDGDYNMV GEGPGEGFNI NVPWDQGRCG DADYLAAWDH ILIPVAREFN PDVIFLSAGF DAAINDPLGG
301: CCVTPYGYSV MLKKLMEFAQ GKIVLALEGG YNLDSIAKSS LACVQVLLED KQIQGPPEAY PFESTWRVIQ AVRKRLCTYW PSLADELSWK LINQKTPTPI
401: ILISSSDSET EDNAQGLLDQ MSKLSIENPQ GTLLENHQVE PASTSWRADL AKVDVWYASF GSNMWKPRFL CYIQGGQVDG LKKVCVGSMD KSPPKETVWE
501: TFPHRLFFGR ESSVGWGVGG VAFTNPLANL IDQTHMCLYR ITLEQFNDVL SQENGLNVDS DSPVFDLAAL QLVDNKGSIL EAPLNSWYGN VVCLGKERDI
601: PILTMTCTLS AVEKFKSGEI PIRPPAKAYA NTLIRGLVEG GRLSKEEAEA YIDKAVSKPL

Arabidopsis Description

HDA05Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4K1Z5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.