CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029339.1-P	Field mustard	cytosol	79.3	85.24
CDY47012	Canola	cytosol	67.7	81.78
CDY23088	Canola	nucleus	58.41	46.68
CDY02173	Canola	nucleus	58.61	46.54
CDY16823	Canola	peroxisome	57.45	45.69
TraesCS1A01G317100.1	Wheat	mitochondrion	35.01	45.59
TraesCS1D01G317100.1	Wheat	mitochondrion	34.24	44.92
CDX87200	Canola	peroxisome	56.87	44.89
TraesCS1B01G329500.1	Wheat	cytosol	33.85	44.87
AT5G61070.1	Thale cress	cytosol	55.51	42.08
HORVU1Hr1G066760.1	Barley	plastid	35.01	41.32
KRH56821	Soybean	nucleus	52.22	41.16
VIT_17s0000g07280.t01	Wine grape	cytosol	51.26	41.02
KRH03123	Soybean	cytosol	50.29	39.63
GSMUA_Achr4P03250_001	Banana	cytosol	49.71	38.7
Solyc03g115150.2.1	Tomato	cytosol	45.84	36.63
Os07t0602200-01	Rice	cytosol, nucleus, plastid	46.03	34.24
Zm00001d006780_P011	Maize	cytosol	46.03	33.81
EER97493	Sorghum	plastid	45.84	33.71
TraesCS2A01G177100.1	Wheat	cytosol	44.49	33.19
TraesCS2D01G185200.1	Wheat	cytosol, golgi	43.71	32.61
TraesCS2B01G204100.1	Wheat	cytosol	43.71	32.61
HORVU2Hr1G032540.2	Barley	plastid	45.65	32.2
CDX82341	Canola	nucleus	25.92	30.18
CDY24487	Canola	cytosol, nucleus, peroxisome	26.5	25.18
CDY22682	Canola	cytosol	18.18	24.35
CDY06315	Canola	cytosol	17.99	24.09
CDX92243	Canola	nucleus	25.92	23.51
CDX68980	Canola	mitochondrion, plastid	16.83	20.47
CDX75356	Canola	plastid	16.83	20.47
CDY21119	Canola	nucleus	18.18	18.73
CDY30008	Canola	nucleus	18.18	18.73
CDX99186	Canola	cytosol	15.09	18.31
CDY52901	Canola	nucleus	16.44	18.24
CDY48160	Canola	cytosol	13.93	17.6
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	13.54	17.46
CDY39570	Canola	cytosol	13.73	17.36
CDY16736	Canola	nucleus	15.67	17.23
CDY48127	Canola	nucleus	15.67	17.23
CDY39567	Canola	cytosol	13.35	17.0
CDY21800	Canola	cytosol	13.15	16.96
CDY48157	Canola	cytosol	12.96	16.79
CDX84385	Canola	cytosol	16.25	16.63
CDY41500	Canola	cytosol	16.25	14.74
CDX88212	Canola	cytosol, golgi, nucleus, plastid	10.83	14.11
CDX80555	Canola	cytosol, golgi, nucleus, plastid	9.48	13.1
CDY53952	Canola	plastid	5.42	11.52

Protein Annotations

Gene3D:3.40.800.20	MapMan:35.1	GO:A0A078HYV8	UniProt:A0A078HYV8	EnsemblPlants:CDY42846	ProteinID:CDY42846
ProteinID:CDY42846.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351
GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041
GO:GO:0070932	EnsemblPlantsGene:GSBRNA2T00075537001	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138
PFAM:PF00850	PANTHER:PTHR10625	PANTHER:PTHR10625:SF177	SUPFAM:SSF52768	UniParc:UPI0004EE3A13	InterPro:Ureohydrolase_dom_sf
SEG:seg	:	:	:	:	:

Description

BnaAnng06710DHistone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A078HYV8]

Coordinates

chrLK032536:-:112908..115365

Molecular Weight (calculated)

57919.1 Da

IEP (calculated)

7.020

GRAVY (calculated)

-0.518

Length

517 amino acids

Sequence
(BLAST)

001: MAGESRKRKV GLLYDERMCK HDTPDGEDHP ECPNRIKAIW AKLQLTGLAQ RCVVLGGSKA EDKHLQLVHT KEHVNLVKSL STKKKDSRRN KIASKLDSIY
101: LNGGSSEAAY LAAGSVVEVA EKVAEGELDC GFAIVRPPGH HAEADEAMGF YLAVKKILIV DWDVHHGNGT QKMFWKDPRV LVFSVHRHDD GSFYPTGDDG
201: DYDKVGEGAG EGFNINVPWE QGRRSGFDAA IGDPRGGCFV TPYGYSVMLK KLMEFAQGKI VMALEGGYNL GSVAKSSLAC VQVLLEEKQI QDSFEEYPYE
301: STCRVIEAVR KRLCAYWPSL ADELPWEAKT PSSPTSSSSS DDGEEVLEST FIQERCIREA KLTILSIRYK KQAESLRASL EVALEEKAAL QTKVAELQGE
401: KLRLQDKYAA EAKEAAEKLT HVSSELREAK IDLDFQRELF KKANEEKKLL EVRVLKLEAE LQQEASDKLR LRISRDRYAA EVKEAAEHLA KVRSELRDVQ
501: IDLNLHRKLP KKAKKVM

Best Arabidopsis Sequence Match ( AT5G61060.1 )
(BLAST)

001: MAMAGESSGK KIGDCDGKVA GNRQRKVGLI YDETMCKHDT PDGEDHPECP DRIRVIWEKL QLAGVSQRCV VLGSSKAEDK HLQLVHTKDH VNLVKSISTK
101: QKDYRRNRIA SQLNSIYLNG GSSEAAYLAA GSVVKLAEKV AEGELDCGFA IVRPPGHHAE ADEAMGFCLF NNVAVAASFL LNERPDLGVK KILIVDWDVH
201: HGNGTQKMFW KDPRVLFFSV HRHEYGGFYP AGDDGDYNMV GEGPGEGFNI NVPWDQGRCG DADYLAAWDH ILIPVAREFN PDVIFLSAGF DAAINDPLGG
301: CCVTPYGYSV MLKKLMEFAQ GKIVLALEGG YNLDSIAKSS LACVQVLLED KQIQGPPEAY PFESTWRVIQ AVRKRLCTYW PSLADELSWK LINQKTPTPI
401: ILISSSDSET EDNAQGLLDQ MSKLSIENPQ GTLLENHQVE PASTSWRADL AKVDVWYASF GSNMWKPRFL CYIQGGQVDG LKKVCVGSMD KSPPKETVWE
501: TFPHRLFFGR ESSVGWGVGG VAFTNPLANL IDQTHMCLYR ITLEQFNDVL SQENGLNVDS DSPVFDLAAL QLVDNKGSIL EAPLNSWYGN VVCLGKERDI
601: PILTMTCTLS AVEKFKSGEI PIRPPAKAYA NTLIRGLVEG GRLSKEEAEA YIDKAVSKPL

Arabidopsis Description

HDA05Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4K1Z5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.