CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72340	nucleus
CDX74753
CDY04820
CDY09147
CDY12284
CDY13468	nucleus
CDY18913
CDY26943
CDY35694
CDY35701
CDY53883
CDY60684
CDY63078
CDY71866

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38130.1	CDX74753	AT2G45640.1	16429262
AT4G38130.1	CDY18913	AT2G45640.1	16429262
AT4G38130.1	CDY53883	AT2G45640.1	16429262
AT4G38130.1	CDY60684	AT2G45640.1	16429262
AT4G38130.1	CDX72340	AT4G32010.1	23362207
AT4G38130.1	CDY13468	AT4G32010.1	23362207
AT4G38130.1	CDX72340	AT4G32010.1	23362207
AT4G38130.1	CDY13468	AT4G32010.1	23362207
AT4G38130.1	CDY04820	AT5G01900.1	18776063
AT4G38130.1	CDY12284	AT5G01900.1	18776063
AT4G38130.1	CDY63078	AT5G01900.1	18776063
AT4G38130.1	CDY09147	AT5G22570.1	18776063
AT4G38130.1	CDY26943	AT5G22570.1	18776063
AT4G38130.1	CDY35694	AT5G22570.1	18776063
AT4G38130.1	CDY35701	AT5G22570.1	18776063
AT4G38130.1	CDY71866	AT5G22570.1	18776063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040131.1-P	Field mustard	nucleus	99.8	99.8
CDY30008	Canola	nucleus	99.4	99.4
AT4G38130.1	Thale cress	nucleus	95.02	95.21
VIT_14s0006g01820.t01	Wine grape	nucleus	84.06	84.06
VIT_03s0038g04240.t01	Wine grape	nucleus	84.06	84.06
Solyc09g091440.2.1	Tomato	nucleus	81.08	81.73
Zm00001d016381_P001	Maize	nucleus	65.94	81.13
KRH60609	Soybean	nucleus	79.68	80.48
KRH51318	Soybean	nucleus	78.88	79.68
PGSC0003DMT400076252	Potato	nucleus	81.27	76.12
Os06t0583400-01	Rice	nucleus	77.89	75.48
Zm00001d053595_P004	Maize	nucleus	77.09	74.85
HORVU7Hr1G085870.2	Barley	nucleus	77.09	74.57
EES04741	Sorghum	nucleus	76.69	74.47
TraesCS7D01G356800.1	Wheat	nucleus	76.89	74.37
TraesCS7B01G261800.1	Wheat	nucleus	76.89	74.37
TraesCS6A01G184100.2	Wheat	nucleus	76.89	74.37
TraesCS6B01G212600.3	Wheat	nucleus	76.89	74.23
Zm00001d014076_P001	Maize	cytosol, mitochondrion, nucleus	14.34	74.23
HORVU6Hr1G038710.1	Barley	cytosol	76.49	74.13
GSMUA_Achr5P06320_001	Banana	nucleus	68.33	73.92
TraesCS7A01G365600.3	Wheat	nucleus	76.69	73.61
KXG20269	Sorghum	nucleus	75.5	73.17
GSMUA_Achr2P19590_001	Banana	nucleus	65.94	72.75
GSMUA_AchrUn_...	Banana	cytosol	56.77	72.33
Os02t0215200-02	Rice	cytoskeleton, cytosol, nucleus	71.12	70.14
Os02t0214900-01	Rice	cytoskeleton, cytosol, nucleus	70.52	69.41
Zm00001d046388_P001	Maize	nucleus	73.31	69.3
TraesCS6D01G171000.1	Wheat	golgi	76.89	67.25
GSMUA_Achr8P04190_001	Banana	cytosol, nucleus, plasma membrane	55.78	64.97
GSMUA_Achr1P14440_001	Banana	cytosol	51.79	62.5
CDY16736	Canola	nucleus	56.37	60.21
CDY48127	Canola	nucleus	56.18	60.0
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	45.62	57.11
CDX84385	Canola	cytosol	57.37	57.03
CDX99186	Canola	cytosol	48.21	56.81
CDY48157	Canola	cytosol	42.63	53.63
Zm00001d039202_P001	Maize	nucleus	17.73	53.61
CDY21800	Canola	cytosol	42.43	53.12
CDY39567	Canola	cytosol	42.03	51.97
CDY41500	Canola	cytosol	57.57	50.7
Zm00001d018346_P001	Maize	mitochondrion	21.71	49.32
CDY48160	Canola	cytosol	40.04	49.14
CDY39570	Canola	cytosol	39.84	48.9
CDY53952	Canola	plastid	16.53	34.16
CDY22682	Canola	cytosol	16.93	22.02
CDY06315	Canola	cytosol	16.53	21.5
CDX88212	Canola	cytosol, golgi, nucleus, plastid	16.73	21.16
CDX80555	Canola	cytosol, golgi, nucleus, plastid	14.94	20.05
CDY42846	Canola	nucleus	18.73	18.18
CDX75356	Canola	plastid	15.34	18.12
CDX68980	Canola	mitochondrion, plastid	15.34	18.12
CDX82341	Canola	nucleus	15.94	18.02
CDY02173	Canola	nucleus	22.91	17.67
CDY47012	Canola	cytosol	14.94	17.52
CDX87200	Canola	peroxisome	22.31	17.1
CDY16823	Canola	peroxisome	22.11	17.08
CDY23088	Canola	nucleus	21.91	17.0
CDY24487	Canola	cytosol, nucleus, peroxisome	17.93	16.54
CDX92243	Canola	nucleus	18.13	15.96
CDY52901	Canola	nucleus	10.76	11.59

Protein Annotations

MapMan:12.3.2.1.1	MapMan:12.3.2.4.1	Gene3D:3.40.800.20	GO:A0A078G6T8	UniProt:A0A078G6T8	EnsemblPlants:CDY21119
ProteinID:CDY21119	ProteinID:CDY21119.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325
GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538
GO:GO:0032041	GO:GO:0046872	GO:GO:0070932	EnsemblPlantsGene:GSBRNA2T00015300001	InterPro:His_deacetylse	InterPro:His_deacetylse_1
InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270
PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF178	SUPFAM:SSF52768	UniParc:UPI0004EEC173	InterPro:Ureohydrolase_dom_sf
SEG:seg	:	:	:	:	:

Description

BnaA01g33500DHistone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A078G6T8]

Coordinates

chrLK032116:-:104744..108452

Molecular Weight (calculated)

55992.1 Da

IEP (calculated)

5.031

GRAVY (calculated)

-0.492

Length

502 amino acids

Sequence
(BLAST)

001: MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYATDR
201: VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI DDESYHLLFK PIMGKVMEIF KPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGI EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN KNSRQMLEVI RNDLLQNLSK LQHAPSVPFQ ERPPDTETPE
401: VDEDQEDGDK RWDADSDMDV DDDRKPIPSR VKREAVEPDG KDKDGVKGVM ERGKGFDVGM EESGSTTKVS GVNSVGMEEA GVKMEEEGTT NKSGGDQVFP
501: KT

Best Arabidopsis Sequence Match ( AT4G38130.2 )
(BLAST)

001: MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYATDR
201: VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI DDESYHLLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTETPE
401: VDEDQEDGDK RWDPDSDMDV DDDRKPIPSR VKREAVEPDT KDKDGLKGIM ERGKGCEVEV DESGSTKVK

Arabidopsis Description

HDA19Histone deacetylase 19 [Source:UniProtKB/Swiss-Prot;Acc:O22446]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.