Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75356 | Canola | plastid | 96.24 | 96.24 |
| AT4G33470.1 | Thale cress | plastid | 86.12 | 86.52 |
| Solyc01g009110.2.1 | Tomato | cytosol, endoplasmic reticulum, nucleus, plastid | 48.47 | 77.74 |
| Zm00001d042974_P001 | Maize | mitochondrion | 37.88 | 74.88 |
| KRH59585 | Soybean | plastid | 65.88 | 66.67 |
| VIT_04s0044g01510.t01 | Wine grape | mitochondrion | 68.47 | 66.59 |
| EES01710 | Sorghum | plastid | 63.76 | 63.02 |
| Os12t0182700-01 | Rice | mitochondrion | 63.76 | 61.17 |
| TraesCS5A01G119300.2 | Wheat | mitochondrion | 63.06 | 60.36 |
| GSMUA_AchrUn_... | Banana | cytosol | 62.59 | 60.05 |
| TraesCS5D01G126600.1 | Wheat | mitochondrion, plastid, vacuole | 62.59 | 59.91 |
| HORVU5Hr1G037920.1 | Barley | cytosol | 63.53 | 59.73 |
| TraesCS5B01G121300.1 | Wheat | vacuole | 63.29 | 59.38 |
| CDX82341 | Canola | nucleus | 24.71 | 23.65 |
| CDY22682 | Canola | cytosol | 20.24 | 22.28 |
| CDY06315 | Canola | cytosol | 19.53 | 21.5 |
| CDY24487 | Canola | cytosol, nucleus, peroxisome | 26.59 | 20.77 |
| CDX92243 | Canola | nucleus | 27.06 | 20.18 |
| CDY16823 | Canola | peroxisome | 26.35 | 17.23 |
| CDY23088 | Canola | nucleus | 25.88 | 17.0 |
| CDX87200 | Canola | peroxisome | 26.12 | 16.95 |
| CDY42846 | Canola | nucleus | 20.47 | 16.83 |
| CDY08684 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 15.76 | 16.71 |
| CDY48127 | Canola | nucleus | 18.35 | 16.6 |
| CDY16736 | Canola | nucleus | 18.35 | 16.6 |
| CDY02173 | Canola | nucleus | 25.41 | 16.59 |
| CDY48157 | Canola | cytosol | 15.29 | 16.29 |
| CDY21800 | Canola | cytosol | 15.29 | 16.21 |
| CDX99186 | Canola | cytosol | 16.24 | 16.2 |
| CDY39567 | Canola | cytosol | 15.29 | 16.01 |
| CDY30008 | Canola | nucleus | 18.12 | 15.34 |
| CDY21119 | Canola | nucleus | 18.12 | 15.34 |
| CDX84385 | Canola | cytosol | 18.12 | 15.25 |
| CDY47012 | Canola | cytosol | 15.06 | 14.95 |
| CDY48160 | Canola | cytosol | 14.12 | 14.67 |
| CDY39570 | Canola | cytosol | 14.12 | 14.67 |
| CDY52901 | Canola | nucleus | 15.53 | 14.16 |
| CDX88212 | Canola | cytosol, golgi, nucleus, plastid | 12.94 | 13.85 |
| CDY41500 | Canola | cytosol | 18.12 | 13.51 |
| CDY53952 | Canola | plastid | 7.53 | 13.17 |
| CDX80555 | Canola | cytosol, golgi, nucleus, plastid | 11.53 | 13.1 |
Protein Annotations
| EnsemblPlants:CDX68980 | EnsemblPlantsGene:GSBRNA2T00130729001 | Gene3D:3.40.800.20 | GO:A0A078BW03 | InterPro:His_deacetylse | InterPro:His_deacetylse_dom |
| InterPro:His_deacetylse_dom_sf | InterPro:IPR037138 | InterPro:Ureohydrolase_dom_sf | PANTHER:PTHR10625 | PANTHER:PTHR10625:SF175 | PFAM:PF00850 |
| PRINTS:PR01270 | ProteinID:CDX68980 | ProteinID:CDX68980.1 | SUPFAM:SSF52768 | UniParc:UPI0004EEA901 | MapMan:12.3.2.1.2 |
Description
BnaC01g04730D
Coordinates
chrLK031789:-:2279035..2281820
Molecular Weight (calculated)
45586.2 Da
IEP (calculated)
6.271
GRAVY (calculated)
-0.084
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MALTVRPLSV PRSGEVSGIR GFNLRNGLSL WRKHLVKQNK GAYICCSFST DNDPLLPSIQ QLTNARVIYS VSAALGHNKD SHPECSARVP AIVTALEKNE
101: LTPKFRGSEI LELANFKNAT IEDIANVHEK AYVLGLEKAM DQASDSGLIF IEGSGPTYAT STTFQDSLTA AGAGMALVDS VVAASRNSLD PPTGFALIRP
201: PGHHAVPKGP MGFCVFGNVA IAARHAQSAH GLKRVFIIDF DVHHGNGTND AFSEDPDIFF LSTHQDGSYP GTGKISDIGK GKGEGTTLNL PLPGGSGDIA
301: MRSAFEDIIV PCVQRFKPDL ILVSAGYDAH VLDPLANLQF TTGTYYSLAK DIKQLAKEVC GGRCVFFLEG GYNLESLSAS VADSFRALLG EESLASEFDN
401: PAYLYDEPMR KVHDAIERAK SIHCL
101: LTPKFRGSEI LELANFKNAT IEDIANVHEK AYVLGLEKAM DQASDSGLIF IEGSGPTYAT STTFQDSLTA AGAGMALVDS VVAASRNSLD PPTGFALIRP
201: PGHHAVPKGP MGFCVFGNVA IAARHAQSAH GLKRVFIIDF DVHHGNGTND AFSEDPDIFF LSTHQDGSYP GTGKISDIGK GKGEGTTLNL PLPGGSGDIA
301: MRSAFEDIIV PCVQRFKPDL ILVSAGYDAH VLDPLANLQF TTGTYYSLAK DIKQLAKEVC GGRCVFFLEG GYNLESLSAS VADSFRALLG EESLASEFDN
401: PAYLYDEPMR KVHDAIERAK SIHCL
001: MSMALIVRPF FVPGSAGISG SRNICKKNQW RKYLLKPSGS SINCSFSTEK NPLLPSIQQL ADARLIYSVS AALGHNKESH PECSARVPAI VNALEMNELT
101: PKFRGSQILE LANFKTATVE DIANVHDKAY VFGLEKAMDE ASDSGLIFIE GSGPTYATST TFQDSLIAAG AGMALVDSVI AASRNSVDPP IGFALIRPPG
201: HHAVPKGPMG FCVFGNVAIA ARHAQRTHGL KRIFIIDFDV HHGNGTNDAF TEDPDIFFLS THQDGSYPGT GKISDIGKGK GEGTTLNLPL PGGSGDIAMR
301: TVFEEIIVPC AQRFKPDIIL VSAGYDAHVL DPLANLQFTT ATYYSLAKDI KRLAKEVCGG RCVFFLEGGY NLESLSSSVA DSFRALLGED SLASEFDNPA
401: YLYDEPMRKV RDAIQRAKSI HCL
101: PKFRGSQILE LANFKTATVE DIANVHDKAY VFGLEKAMDE ASDSGLIFIE GSGPTYATST TFQDSLIAAG AGMALVDSVI AASRNSVDPP IGFALIRPPG
201: HHAVPKGPMG FCVFGNVAIA ARHAQRTHGL KRIFIIDFDV HHGNGTNDAF TEDPDIFFLS THQDGSYPGT GKISDIGKGK GEGTTLNLPL PGGSGDIAMR
301: TVFEEIIVPC AQRFKPDIIL VSAGYDAHVL DPLANLQFTT ATYYSLAKDI KRLAKEVCGG RCVFFLEGGY NLESLSSSVA DSFRALLGED SLASEFDNPA
401: YLYDEPMRKV RDAIQRAKSI HCL
Arabidopsis Description
HDA14Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A178V1U6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.