CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus, plastid
Any Predictor:	golgi, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88212	Canola	cytosol, golgi, nucleus, plastid	98.13	92.44
AT5G26040.2	Thale cress	endoplasmic reticulum	84.22	81.4
KRH05486	Soybean	cytosol	64.17	68.97
VIT_04s0008g00910.t01	Wine grape	plastid	64.97	67.69
Solyc08g065350.2.1	Tomato	cytosol	62.3	67.15
PGSC0003DMT400076991	Potato	cytosol	62.03	65.54
Os06t0571100-01	Rice	plastid	60.16	63.92
KXG29820	Sorghum	cytosol	58.82	62.5
TraesCS7B01G266000.1	Wheat	plastid	58.56	62.04
TraesCS7A01G362600.1	Wheat	plastid	58.82	61.97
TraesCS7D01G360500.1	Wheat	plastid	58.29	61.76
EER89968	Sorghum	plastid	56.42	60.29
Zm00001d046348_P003	Maize	plastid	56.42	55.38
GSMUA_Achr10P...	Banana	plastid	62.57	53.3
HORVU0Hr1G021730.1	Barley	cytosol	16.31	50.83
CDY16736	Canola	nucleus	21.66	17.23
CDY48127	Canola	nucleus	21.66	17.23
CDY48157	Canola	cytosol	17.65	16.54
CDY21800	Canola	cytosol	17.38	16.21
CDY48160	Canola	cytosol	17.65	16.14
CDX84385	Canola	cytosol	21.39	15.84
CDX99186	Canola	cytosol	17.38	15.26
CDY39570	Canola	cytosol	16.58	15.16
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	16.04	14.96
CDY30008	Canola	nucleus	20.05	14.94
CDY21119	Canola	nucleus	20.05	14.94
CDY41500	Canola	cytosol	21.39	14.04
CDY39567	Canola	cytosol	14.44	13.3
CDX68980	Canola	mitochondrion, plastid	13.1	11.53
CDY22682	Canola	cytosol	11.76	11.4
CDY06315	Canola	cytosol	11.76	11.4
CDX75356	Canola	plastid	12.83	11.29
CDY42846	Canola	nucleus	13.1	9.48
CDX82341	Canola	nucleus	10.7	9.01
CDY23088	Canola	nucleus	14.97	8.66
CDY24487	Canola	cytosol, nucleus, peroxisome	12.57	8.64
CDY02173	Canola	nucleus	14.97	8.6
CDY16823	Canola	peroxisome	14.71	8.46
CDX87200	Canola	peroxisome	14.71	8.4
CDX92243	Canola	nucleus	12.57	8.25
CDY53952	Canola	plastid	5.35	8.23
CDY47012	Canola	cytosol	8.56	7.48
CDY52901	Canola	nucleus	9.09	7.3

Protein Annotations

EnsemblPlants:CDX80555	EnsemblPlantsGene:GSBRNA2T00133667001	Gene3D:3.40.800.20	GO:A0A078CUS3	InterPro:His_deacetylse	InterPro:His_deacetylse_dom
InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	InterPro:Ureohydrolase_dom_sf	PANTHER:PTHR43497	PANTHER:PTHR43497:SF2	PFAM:PF00850
PRINTS:PR01270	ProteinID:CDX80555	ProteinID:CDX80555.1	SUPFAM:SSF52768	UniParc:UPI0004EF3A02	MapMan:12.3.2.1.3

Description

BnaC07g28890D

Coordinates

chrLK031821:-:1270377..1272714

Molecular Weight (calculated)

42219.5 Da

IEP (calculated)

6.944

GRAVY (calculated)

-0.109

Length

374 amino acids

Sequence
(BLAST)

001: MKDVRVVSTW TDLTRDSAVY LLFTFSAIKV SQFIYRCFQS SETSSFSMET HPEALRRERI LSSKLYFNVP ETKVSIIYSS AYDISFMGIE KLHPFDSTKW
101: RRVCKFLVSD GFLEEKSIVE PLEASNSDLL VVHSLNYLNS LKSSATVARI TEVPPVAFFP NFLVQQKVLS PFRKQVGGTI LAAKLAVERG WAINVGGGFH
201: HCTAERGGGF CAFADISLCI HFAFLRLSIS RVMIIDLDAH QGNGHETDLG DDSRVYILDM YNPEIYPYDY SARRFIDQKV EVRSGTSTDE YLRKLDKALE
301: VAFLNFQPEM QNISPDGITS RDEKVFRVAR EREVPVVMLT SGGYMKSNAR VIADSIENLS RQGLIKTQLD SAST

Best Arabidopsis Sequence Match ( AT5G26040.2 )
(BLAST)

001: MTHTRVISTW TELTRDLAIY LLFTFFAIKV FKFLFSCNRT SEISSFSMAT HPEALRRERI LNSKLYFDVP LSKVSIIYSS SYDISFMGIE KLHPFDSSKW
101: GRVCKFLVSD GFLEEKAIVE PLEASKIDLL VVHSENYLNS LKSSATVARI TEVAPVAFFP NFLVQQKVLY PFRKQVGGTI LAAKLATERG WAINIGGGFH
201: HCTAERGGGF CAFADISLCI HFAFLRLRIS RVMIIDLDAH QGNGHETDLG DDNRVYILDM YNPEIYPFDY RARRFIDQKV EVMSGTTTDE YLRKLDEALE
301: VASRNFQPEL VIYNAGTDIL DGDPLGLLKI SPDGITSRDE KVFRFAREKN IPLVMLTSGG YMKSSARVIA DSIENLSRQG LIQTRPE

Arabidopsis Description

HDA2Histone deacetylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q944K3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.