Factsheet for Solyc08g065350.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076991	Potato	cytosol	96.54	94.63
VIT_04s0008g00910.t01	Wine grape	plastid	80.69	77.99
KRH05486	Soybean	cytosol	78.1	77.87
Os06t0571100-01	Rice	plastid	74.35	73.3
Bra009877.1-P	Field mustard	cytosol	71.76	71.35
TraesCS7D01G360500.1	Wheat	plastid	70.89	69.69
TraesCS7A01G362600.1	Wheat	plastid	70.89	69.3
TraesCS7B01G266000.1	Wheat	plastid	70.32	69.12
EER89968	Sorghum	plastid	69.45	68.86
KXG29820	Sorghum	cytosol	69.74	68.75
AT5G26040.2	Thale cress	endoplasmic reticulum	73.2	65.63
Zm00001d046348_P003	Maize	plastid	70.03	63.78
CDX88212	Canola	cytosol, golgi, nucleus, plastid	72.62	63.48
GSMUA_Achr10P...	Banana	plastid	78.96	62.41
CDX80555	Canola	cytosol, golgi, nucleus, plastid	67.15	62.3
HORVU0Hr1G021730.1	Barley	cytosol	18.73	54.17
Solyc03g112410.1.1	Tomato	cytosol	24.78	19.15
Solyc11g067020.1.1	Tomato	cytosol	22.77	18.37
Solyc06g071680.2.1	Tomato	cytosol	24.5	18.05
Solyc01g009110.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus, plastid	13.54	17.74
Solyc09g091440.2.1	Tomato	nucleus	25.07	17.47
Solyc06g074080.2.1	Tomato	cytosol	16.14	14.55
Solyc03g115150.2.1	Tomato	cytosol	20.46	10.97
Solyc03g119730.2.1	Tomato	nucleus	17.29	9.84

Protein Annotations

MapMan:12.3.2.1.3	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0016787	InterPro:His_deacetylse
InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	UniProt:K4CLB5	PFAM:PF00850	PRINTS:PR01270
PANTHER:PTHR43497	PANTHER:PTHR43497:SF2	SUPFAM:SSF52768	EnsemblPlantsGene:Solyc08g065350.2	EnsemblPlants:Solyc08g065350.2.1	UniParc:UPI000276B6BD
InterPro:Ureohydrolase_dom_sf	SEG:seg	:	:	:	:

Description

Histone deacetylase 2 [Source:Projected from Arabidopsis thaliana (AT5G26040) UniProtKB/Swiss-Prot;Acc:Q944K3]

Coordinates

chr8:+:53260068..53268536

Molecular Weight (calculated)

38734.7 Da

IEP (calculated)

7.305

GRAVY (calculated)

-0.116

Length

347 amino acids

Sequence
(BLAST)

001: MSSAASSSKT DDAEALRRSR ILSSPLYYDV PPSKVPLIYS SSYDIAFFGI EKLHPFDSSK WGRICRFLTK EGIMDQKHVV EPVEATKDDL LVVHSESYLK
101: SLNSSLNVSM IIEVPPVAML PNCLVQKKVL HPFRKQVGGT ILAAKLAKER GWAINVGGGF HHCSSEKGGG FCVYADISLC IHFAFVRLNI SRVMIIDLDA
201: HQGNGHEMDF SDDRRVFILD MYNPRIYPLD FEARRYIDLK VEVKSGTATD EYLTKLDHAL EVAEKRFDPD FIVYNAGTDI LDGDPLGRLK ISPDGIASRD
301: EKVFRFARER SIPLIMLTSG GYMKSSAKVI ADSIVNLSSK SLIDMKS

Best Arabidopsis Sequence Match ( AT5G26040.2 )
(BLAST)

001: MTHTRVISTW TELTRDLAIY LLFTFFAIKV FKFLFSCNRT SEISSFSMAT HPEALRRERI LNSKLYFDVP LSKVSIIYSS SYDISFMGIE KLHPFDSSKW
101: GRVCKFLVSD GFLEEKAIVE PLEASKIDLL VVHSENYLNS LKSSATVARI TEVAPVAFFP NFLVQQKVLY PFRKQVGGTI LAAKLATERG WAINIGGGFH
201: HCTAERGGGF CAFADISLCI HFAFLRLRIS RVMIIDLDAH QGNGHETDLG DDNRVYILDM YNPEIYPFDY RARRFIDQKV EVMSGTTTDE YLRKLDEALE
301: VASRNFQPEL VIYNAGTDIL DGDPLGLLKI SPDGITSRDE KVFRFAREKN IPLVMLTSGG YMKSSARVIA DSIENLSRQG LIQTRPE

Arabidopsis Description

HDA2Histone deacetylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q944K3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.