Factsheet for PGSC0003DMT400076991

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g065350.2.1	Tomato	cytosol	94.63	96.54
KRH05486	Soybean	cytosol	76.84	78.16
VIT_04s0008g00910.t01	Wine grape	plastid	77.97	76.88
Os06t0571100-01	Rice	plastid	73.45	73.86
Bra009877.1-P	Field mustard	cytosol	70.06	71.06
EER89968	Sorghum	plastid	69.21	70.0
TraesCS7D01G360500.1	Wheat	plastid	69.77	69.97
TraesCS7A01G362600.1	Wheat	plastid	69.77	69.58
TraesCS7B01G266000.1	Wheat	plastid	69.21	69.41
KXG29820	Sorghum	cytosol	68.64	69.03
AT5G26040.2	Thale cress	endoplasmic reticulum	71.47	65.37
Zm00001d046348_P003	Maize	plastid	69.77	64.83
CDX88212	Canola	cytosol, golgi, nucleus, plastid	70.9	63.22
GSMUA_Achr10P...	Banana	plastid	77.12	62.19
CDX80555	Canola	cytosol, golgi, nucleus, plastid	65.54	62.03
HORVU0Hr1G021730.1	Barley	cytosol	18.64	55.0
PGSC0003DMT400068240	Potato	cytosol	22.6	20.15
PGSC0003DMT400046818	Potato	cytosol	24.86	19.3
PGSC0003DMT400069419	Potato	nucleus	25.42	19.11
PGSC0003DMT400076252	Potato	nucleus	25.14	16.6
PGSC0003DMT400015085	Potato	cytoskeleton, cytosol, nucleus	16.67	15.57
PGSC0003DMT400014582	Potato	nucleus	17.23	10.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400076991	EnsemblPlantsGene:PGSC0003DMG400029944	EntrezGene:102595280	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	InterPro:Ureohydrolase_dom_sf
PANTHER:PTHR43497	PANTHER:PTHR43497:SF2	PFAM:PF00850	PGSC:PGSC0003DMG400029944	PRINTS:PR01270	RefSeq:XP_006360985.1
SEG:seg	SUPFAM:SSF52768	UniParc:UPI0002968ABF	UniProt:M1CXR3	MapMan:12.3.2.1.3	:

Description

Histone deacetylase [Source:PGSC_GENE;Acc:PGSC0003DMG400029944]

Coordinates

chr8:+:36174472..36182020

Molecular Weight (calculated)

39374.5 Da

IEP (calculated)

7.141

GRAVY (calculated)

-0.101

Length

354 amino acids

Sequence
(BLAST)

001: MSSTASSSKT DDAEALRRHR ILSSHLYYDV PPSKVPLIYS PSYDIAFFGI EKLHPFDSSK WGRICRFLTK EGIMDQKHVV EPVEATKDDL LVVHSESYLK
101: SLNSSLNVSM IVEVPPVAML PNCLVQKKVL HPFRKQVGGT ILAAKLAKER GWAINVGGGF HHCSSEKGGG FCVYADISLC IHFAFVRLNI SRVMIIDLDA
201: HQGNGHEMDF SDDKRVFILD MYNPGIYPLD FEARRYIDLG VEVKSGTATD EYLTKLDHAL EVAEKKFDPD FIVYNAGTDI LDGDPLGRLK ISPDGIASRD
301: EKVFRFARER NIPLIMLTSG GYMKSSAKVI ADSIVNLSNK SLINMKSLLT GQAL

Best Arabidopsis Sequence Match ( AT5G26040.2 )
(BLAST)

001: MTHTRVISTW TELTRDLAIY LLFTFFAIKV FKFLFSCNRT SEISSFSMAT HPEALRRERI LNSKLYFDVP LSKVSIIYSS SYDISFMGIE KLHPFDSSKW
101: GRVCKFLVSD GFLEEKAIVE PLEASKIDLL VVHSENYLNS LKSSATVARI TEVAPVAFFP NFLVQQKVLY PFRKQVGGTI LAAKLATERG WAINIGGGFH
201: HCTAERGGGF CAFADISLCI HFAFLRLRIS RVMIIDLDAH QGNGHETDLG DDNRVYILDM YNPEIYPFDY RARRFIDQKV EVMSGTTTDE YLRKLDEALE
301: VASRNFQPEL VIYNAGTDIL DGDPLGLLKI SPDGITSRDE KVFRFAREKN IPLVMLTSGG YMKSSARVIA DSIENLSRQG LIQTRPE

Arabidopsis Description

HDA2Histone deacetylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q944K3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.