Factsheet for PGSC0003DMT400076252

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400035608
PGSC0003DMT400057590	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38130.1	PGSC0003DMT400035608	AT2G45640.1	16429262
AT4G38130.1	PGSC0003DMT400057590	AT4G32010.1	23362207
AT4G38130.1	PGSC0003DMT400057590	AT4G32010.1	23362207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g091440.2.1	Tomato	nucleus	91.79	98.8
VIT_03s0038g04240.t01	Wine grape	nucleus	77.61	82.87
Bra040131.1-P	Field mustard	nucleus	76.31	81.47
VIT_14s0006g01820.t01	Wine grape	nucleus	76.31	81.47
CDY21119	Canola	nucleus	76.12	81.27
CDY30008	Canola	nucleus	75.93	81.08
KRH60609	Soybean	nucleus	74.63	80.48
AT4G38130.1	Thale cress	nucleus	75.19	80.44
KRH51318	Soybean	nucleus	74.07	79.88
KRH77972	Soybean	nucleus	73.32	79.07
KRH27562	Soybean	nucleus	73.32	79.07
Os06t0583400-01	Rice	nucleus	72.95	75.48
KXG20269	Sorghum	nucleus	72.2	74.71
TraesCS7D01G356800.1	Wheat	nucleus	71.64	73.99
HORVU7Hr1G085870.2	Barley	nucleus	71.46	73.8
TraesCS7B01G261800.1	Wheat	nucleus	71.46	73.8
TraesCS7A01G365600.3	Wheat	nucleus	71.83	73.61
GSMUA_AchrUn_...	Banana	cytosol	54.1	73.6
GSMUA_Achr5P06320_001	Banana	nucleus	63.25	73.06
GSMUA_Achr2P19590_001	Banana	nucleus	61.75	72.75
Zm00001d046388_P001	Maize	nucleus	69.59	70.24
GSMUA_Achr8P04190_001	Banana	cytosol, nucleus, plasma membrane	53.73	66.82
GSMUA_Achr1P14440_001	Banana	cytosol	49.81	64.18
PGSC0003DMT400069419	Potato	nucleus	54.66	62.21
PGSC0003DMT400046818	Potato	cytosol	50.19	58.99
PGSC0003DMT400068240	Potato	cytosol	42.72	57.68
PGSC0003DMT400076991	Potato	cytosol	16.6	25.14
PGSC0003DMT400015085	Potato	cytoskeleton, cytosol, nucleus	15.49	21.9
PGSC0003DMT400014582	Potato	nucleus	15.86	13.93

Protein Annotations

EntrezGene:102606021	MapMan:12.3.2.1.1	MapMan:12.3.2.4.1	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824
GO:GO:0004407	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575
GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0046872	GO:GO:0070932	InterPro:His_deacetylse
InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	UniProt:M1CWG6	PFAM:PF00850
EnsemblPlantsGene:PGSC0003DMG400029646	PGSC:PGSC0003DMG400029646	EnsemblPlants:PGSC0003DMT400076252	PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271
PANTHER:PTHR10625	PANTHER:PTHR10625:SF178	SUPFAM:SSF52768	UniParc:UPI00029583C6	InterPro:Ureohydrolase_dom_sf	RefSeq:XP_006360329.1

Description

Histone deacetylase [Source:PGSC_GENE;Acc:PGSC0003DMG400029646]

Coordinates

chr9:-:58261115..58267436

Molecular Weight (calculated)

59824.6 Da

IEP (calculated)

5.750

GRAVY (calculated)

-0.492

Length

536 amino acids

Sequence
(BLAST)

001: MDVGGNSLAS GADGKKRKVS YFYDPEVGNY YYGQGHPMKP HRMRMTHALL AHYGLLQHMH VLKPNPARDK DLCRFHADDY IAFLRSVTPE TQQDQLRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGAV KLNHGHCDIA VNWAGGLHHA KKCEASGFCY VNDIVLAILE LLKVHERVLY VDIDIHHGDG VEEAFYTTDR
201: VMTVSFHKFG DYFPGTGDVR DIGYGSGKYY SLNVPLDDGI DDESYQSLFK PIMGKVMEVF KPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKYMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGI ELEDKMPQHE YYEYFGPDYT LHVAPSNMEN KNSRQILEDI RSKLLENLSK LQHAPSVQFQ ERPPDTELPE
401: GFGLTVRTQR LMCGLSTHYG FKSYCGQSLV IKLGGGYQAD EDLEDADSRW DADSDTNGEE RKPIPSRVRR EHVEPEGKGM DDMKTEEHLR EVESTFAEST
501: SLKGGNSGST LIDGGQIKLE QGNSNKPFDQ PTDIIS

Best Arabidopsis Sequence Match ( AT4G38130.1 )
(BLAST)

001: MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYATDR
201: VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI DDESYHLLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTETPE
401: VDEDQEDGDK RWDPDSDMDV DDDRKPIPSR VKREAVEPDT KDKDGLKGIM ERGKGCEVEV DESGSTKVTG VNPVGVEEAS VKMEEEGTNK GGAEQAFPPK
501: T

Arabidopsis Description

HDA19Histone deacetylase 19 [Source:UniProtKB/Swiss-Prot;Acc:O22446]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.