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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 3
  • nucleus 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:cytosol
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002421.1-P
Bra004926.1-P
Bra020196.1-P
Bra020197.1-P
Bra023211.1-P
Bra023968.1-P nucleus
Bra028918.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G38130.1 Bra004926.1-P AT2G45640.1 16429262
AT4G38130.1 Bra023968.1-P AT4G32010.1 23362207
AT4G38130.1 Bra023968.1-P AT4G32010.1 23362207
AT4G38130.1 Bra023211.1-P AT5G01900.1 18776063
AT4G38130.1 Bra028918.1-P AT5G01900.1 18776063
AT4G38130.1 Bra002421.1-P AT5G22570.1 18776063
AT4G38130.1 Bra020196.1-P AT5G22570.1 18776063
AT4G38130.1 Bra020197.1-P AT5G22570.1 18776063
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY21119 Canola nucleus 99.8 99.8
CDY30008 Canola nucleus 99.2 99.2
AT4G38130.1 Thale cress nucleus 94.82 95.01
VIT_14s0006g01820.t01 Wine grape nucleus 84.26 84.26
VIT_03s0038g04240.t01 Wine grape nucleus 84.26 84.26
Solyc09g091440.2.1 Tomato nucleus 81.27 81.93
Zm00001d016381_P001 Maize nucleus 65.94 81.13
KRH60609 Soybean nucleus 79.88 80.68
KRH51318 Soybean nucleus 79.08 79.88
PGSC0003DMT400076252 Potato nucleus 81.47 76.31
Os06t0583400-01 Rice nucleus 78.09 75.68
Zm00001d053595_P004 Maize nucleus 77.29 75.05
HORVU7Hr1G085870.2 Barley nucleus 77.29 74.76
EES04741 Sorghum nucleus 76.89 74.66
TraesCS7B01G261800.1 Wheat nucleus 77.09 74.57
TraesCS6A01G184100.2 Wheat nucleus 77.09 74.57
TraesCS7D01G356800.1 Wheat nucleus 77.09 74.57
TraesCS6B01G212600.3 Wheat nucleus 77.09 74.42
HORVU6Hr1G038710.1 Barley cytosol 76.69 74.32
Zm00001d014076_P001 Maize cytosol, mitochondrion, nucleus 14.34 74.23
GSMUA_Achr5P06320_001 Banana nucleus 68.53 74.14
TraesCS7A01G365600.3 Wheat nucleus 76.89 73.81
KXG20269 Sorghum nucleus 75.7 73.36
GSMUA_Achr2P19590_001 Banana nucleus 66.14 72.97
GSMUA_AchrUn_... Banana cytosol 56.77 72.33
Os02t0215200-02 Rice cytoskeleton, cytosol, nucleus 71.12 70.14
Zm00001d046388_P001 Maize nucleus 73.51 69.49
Os02t0214900-01 Rice cytoskeleton, cytosol, nucleus 70.52 69.41
TraesCS6D01G171000.1 Wheat golgi 77.09 67.42
GSMUA_Achr8P04190_001 Banana cytosol, nucleus, plasma membrane 55.98 65.2
GSMUA_Achr1P14440_001 Banana cytosol 51.99 62.74
Bra035858.1-P Field mustard nucleus 56.57 60.43
Bra019424.1-P Field mustard cytosol 48.21 56.81
Bra019516.1-P Field mustard cytosol 42.83 53.62
Zm00001d039202_P001 Maize nucleus 17.73 53.61
Bra018073.1-P Field mustard cytosol 41.83 52.63
Bra038607.1-P Field mustard cytosol 57.77 50.88
Zm00001d018346_P001 Maize mitochondrion 21.71 49.32
Bra018072.1-P Field mustard cytosol 40.84 46.38
Bra009877.1-P Field mustard cytosol 16.93 24.36
Bra031628.1-P Field mustard cytosol 16.53 21.5
Bra029339.1-P Field mustard cytosol 19.92 20.79
Bra012984.1-P Field mustard nucleus 22.51 17.47
Bra011444.1-P Field mustard golgi, vacuole 15.54 17.37
Bra001708.1-P Field mustard nucleus 14.14 17.03
Bra035942.1-P Field mustard peroxisome 21.91 16.92
Bra022329.1-P Field mustard nucleus 18.13 15.96
Protein Annotations
MapMan:12.3.2.1.1MapMan:12.3.2.4.1Gene3D:3.40.800.20ProteinID:ACT33454ProteinID:ACT33454.1EnsemblPlantsGene:Bra040131
EnsemblPlants:Bra040131.1EnsemblPlants:Bra040131.1-PUniProt:C7E641GO:GO:0000118GO:GO:0003674GO:GO:0003824
GO:GO:0004407GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005654GO:GO:0006139GO:GO:0006325GO:GO:0006351GO:GO:0006355GO:GO:0006464
GO:GO:0006950GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009294
GO:GO:0009405GO:GO:0009605GO:GO:0009607GO:GO:0009861GO:GO:0009987GO:GO:0016043
GO:GO:0016569GO:GO:0016573GO:GO:0016575GO:GO:0016787GO:GO:0019538GO:GO:0032041
GO:GO:0045892GO:GO:0046872GO:GO:0070932GO:GO:1902459GO:GO:2000026EMBL:GQ253431
InterPro:His_deacetylseInterPro:His_deacetylse_1InterPro:His_deacetylse_domInterPro:His_deacetylse_dom_sfInterPro:IPR037138PFAM:PF00850
PIRSF:PIRSF037913PRINTS:PR01270PRINTS:PR01271PANTHER:PTHR10625PANTHER:PTHR10625:SF178SUPFAM:SSF52768
UniParc:UPI0001AF8984InterPro:Ureohydrolase_dom_sfSEG:seg:::
Description
AT4G38130 (E=8e-284) HD1, HDA19, ATHD1, HDA1, RPD3A | HD1 (HISTONE DEACETYLASE 1); basal transcription repressor/ histone deacetylase/ protein binding
Coordinates
chrA01:-:28412814..28415762
Molecular Weight (calculated)
55978.1 Da
IEP (calculated)
5.029
GRAVY (calculated)
-0.492
Length
502 amino acids
Sequence
(BLAST)
001: MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYATDR
201: VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI DDESYHLLFK PIMGKVMEIF KPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGI EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN KNSRQMLEVI RNDLLQNLSK LQHAPSVPFQ ERPPDTETPE
401: VDEDQEDGDK RWDADSDMDV DDDRKPIPSR VKREAVEPDG KDKDGVKGVM ERGKGFDVGM EESGSTTKVS GVNSVGMDEA GVKMEEEGTT NKSGGDQVFP
501: KT
Best Arabidopsis Sequence Match ( AT4G38130.2 )
(BLAST)
001: MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYATDR
201: VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI DDESYHLLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTETPE
401: VDEDQEDGDK RWDPDSDMDV DDDRKPIPSR VKREAVEPDT KDKDGLKGIM ERGKGCEVEV DESGSTKVK
Arabidopsis Description
HDA19Histone deacetylase 19 [Source:UniProtKB/Swiss-Prot;Acc:O22446]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.