Factsheet for Bra031628.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra031628.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G08460.1	Bra031628.1-P	AT1G08460.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06315	Canola	cytosol	98.19	98.19
CDY22682	Canola	cytosol	96.89	96.89
AT1G08460.1	Thale cress	cytosol	85.75	87.8
VIT_06s0080g00210.t01	Wine grape	nucleus	64.25	71.26
Solyc06g074080.2.1	Tomato	cytosol	69.69	69.87
PGSC0003DMT400015085	Potato	cytoskeleton, cytosol, nucleus	68.39	69.66
KRH26679	Soybean	cytosol	66.84	67.72
HORVU1Hr1G074110.1	Barley	cytosol	68.13	67.61
EES19606	Sorghum	cytosol	67.36	66.67
TraesCS1A01G275300.1	Wheat	cytosol, nucleus, plastid	67.1	66.24
TraesCS1B01G284500.1	Wheat	cytosol, nucleus, plastid	66.84	65.65
TraesCS1D01G274900.1	Wheat	cytosol, nucleus, plastid	60.88	64.21
Zm00001d010162_P002	Maize	cytosol	52.85	36.23
Zm00001d010152_P002	Maize	cytosol	52.85	36.23
Bra001708.1-P	Field mustard	nucleus	25.65	23.74
Bra029339.1-P	Field mustard	cytosol	26.17	21.0
Bra022329.1-P	Field mustard	nucleus	30.31	20.53
Bra011444.1-P	Field mustard	golgi, vacuole	21.76	18.71
Bra019424.1-P	Field mustard	cytosol	20.47	18.54
Bra035858.1-P	Field mustard	nucleus	22.02	18.09
Bra018073.1-P	Field mustard	cytosol	17.36	16.79
Bra019516.1-P	Field mustard	cytosol	17.36	16.71
Bra012984.1-P	Field mustard	nucleus	27.98	16.69
Bra040131.1-P	Field mustard	nucleus	21.5	16.53
Bra035942.1-P	Field mustard	peroxisome	27.46	16.31
Bra009877.1-P	Field mustard	cytosol	13.73	15.19
Bra018072.1-P	Field mustard	cytosol	17.1	14.93
Bra038607.1-P	Field mustard	cytosol	21.24	14.39
GSMUA_Achr7P09050_001	Banana	cytosol	10.36	14.23
GSMUA_Achr7P09060_001	Banana	mitochondrion	1.04	7.69
Os05t0440100-02	Rice	cytosol	1.55	2.19

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.40.800.20	EnsemblPlantsGene:Bra031628	EnsemblPlants:Bra031628.1	EnsemblPlants:Bra031628.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575
GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_dom
InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	UniProt:M4ES50	PFAM:PF00850	PRINTS:PR01270	PANTHER:PTHR10625
PANTHER:PTHR10625:SF121	SUPFAM:SSF52768	UniParc:UPI000254330A	InterPro:Ureohydrolase_dom_sf	SEG:seg	:

Description

AT1G08460 (E=5e-185) HDA08, HDA8, ATHDA8 | HDA08; histone deacetylase

Coordinates

chrA09:-:35501330..35503254

Molecular Weight (calculated)

42227.1 Da

IEP (calculated)

6.043

GRAVY (calculated)

-0.234

Length

386 amino acids

Sequence
(BLAST)

001: MLSSDQTSKP QSDAVDVFWH EGMLQHDAVQ GVFDTGINPG FLDVLEKHPE NADRVRNMVS ILQRGPISPR VNWLPGRLAI VSELLTFHTS DYINKLIEAD
101: KSGERREISA GTFMSPGSWE AALLAAGTTL SAMQHILDSH GKIAYALVRP PGHHSQPTQA DGYCFLNNAA LAVKLALDSG RCSRVAVVDI DVHYGNGTAE
201: GFYRSDKVLT VSLHMNHGSW GSSHPQRGSV DELGEGVGLG YNLNVPLPNG TGDKGYEYAV NELVVPAVRR FGPDMVVLVV GQDSSAFDPN GRQCLTMNGY
301: RRIGQIMRAM ADEHSNGRLL MVQEGGYHVT YAAYCLHAML EGVLKIPEPH LEDPVAYYPE DEAVAVEAVK SIKRYHSEYV PFLRGT

Best Arabidopsis Sequence Match ( AT1G08460.1 )
(BLAST)

001: MVTNRVDVFW HEGMLRHDAV EGVFDTGYDP GFLDVLEKHP ENADRVRNML SILRRGPIAP HVNWFTGLPA IVSELLMFHT SEYIEKLVEA DKSGERCEIA
101: AGTFMSPGSW EAALLAAGTT LSAMQHILDC HGKIAYALVR PPGHHSQPTQ ADGYCFLNNA ALAVKLALNS GSCSRVAVID IDVHYGNGTA EGFYTSDKVL
201: TVSLHMNHGS WGSSHPQKGS IDELGEDVGL GYNLNVPLPN GTGDRGYEYA MNELVVPAVR RFGPDMVVLV VGQDSSAFDP NGRQSLTMNG YRRIGQIMRG
301: VAEEHSHGRL LMVQEGGYHV TYAAYCLHAM LEGVLKIPEP HLSDPIAYYP EEEANAVAAV ESIKTYHTEF VPFLRGT

Arabidopsis Description

HDA8Histone deacetylase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q94EJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.